Gene detail

Gene detail information of Glyur005429s00043774

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G14790.1	RNA-dependent RNA polymerase 1
NR	KEH40645.1	RNA-directed RNA polymerase [Medicago truncatula]
Swissprot	tr\|Q9LQV2\|RDR1_ARATH	RNA-dependent RNA polymerase 1
trEMBL	tr\|A0A072VR80\|A0A072VR80_MEDTR	RNA-directed RNA polymerase {ECO:0000313\|EMBL:KEH40645.1}

Sequence

Transcript Sequence

>Glyur005429s00043774.1
AAGGAACTTAGTTAAAGATTTGAGTGTACAGAATAATTGTCCATATATATAGATATAGATTCCATTTTGTTTCTAAAACTTTTGCTAACCTGCTAATAAATGTTGCACTTATTTTTTCCTGTTTAGAAATATCAGCATTTTCAAAAGACATCAAGGATAACTGTTGATGTTGTGACACCTAACTTAGGAAAGCCAAGAGTTACCATTTAGGATGGGTAAAACAATTAAGGTGTATGGATTCCCTTCTCATGTGATTGAGTCTCTTGTAAAGAGATTTATAGAGCATTATACTGGTGAAGAAACTGTGTTTGCTATTAAGATAAGACAAGGCAAAAGAGCATTTGCATTTATTCAATTCACTTCTGCAAAACATGCTACAGATATGATGTCCTTCCCTGACAGAAGTTTGTGGTATGGTAACTCCTATCTAAAAGTTCAGGAAGCGGAAAGAGATGTTGTTCCAAGGCCAAGGACTTTCTTGAACAGTTTGAATAATGTGAAACTGTATTTTGGCTGTCAAATCTCGAAGGGAAGAATCTCTGTTTTATGGAAAAAGGTGAATGATGTTACTGTAGAGTTTGGGATTGGAATGAGAAAGTGGCGTTTCTTTCTGTTCCATGGTGACAATAAGTACAAACTTGAGCTTTCATATGAGAACATTTGTAAGATTGAGCTGTATCAACCACAGGGTGAAACTACAAAGTATCTCCTGATTCAGTTACAAGGTGCTCCTCGGATTTTTAAGATGGTTATTCCCACTTCAGCAAATATATATGAAGATCCTTTGTTGAACTATTTTAAAGATACACCTGATGAGCAATGGATTCGAGCAATAGATTTCNCTCCTTGCAGTTGTATTGGGCAGTCTTCTGCTTTATGTCTGGAGCTTCCCGATGACCAAGATTTTCCAAATTTCAGGGAAAACTTTGCTTATTATGAGGAAAGTGAGAAGCAGTACGCTTTGGAGAGTGGATANNCTTTTTCTCNCAATCCGGATCTTGTCCCCATTGTTGCTCCTCCTCAANNCATTGAAATTCCATTTGACATCTTGTTTAAAGTTAATTCNTTGGTTCAGCACGGGTATCTTTCAGGTTCTGGACTTGANAACAANTTCTATCATATGGTTGATCCNCGTAAAGTGAACCTTGAATTTATTGAGCATGCTTTAGAAAAGATGTACTATTCAAAAGATTTCTGTTATGAACCCACAAGTTGGTTGATTGATCAGTACAAGAGGTACTTGTCTTCAAATAATCCACCTCAGTCACCTATGATATCCTTGGATACAGGGTTGGTATATGTACGCAGGGTTCAGATTACACCATGCAAAGTATACTTTTGTGGTCCAGAGATTAATGTCTCAAATCGTGTTCTCCGCCATTTCAATGAACATATCAATAACTTTCTACGTGTTTCATTTGTTGATGAGGAGTTGGATAATCTGTATTCAACAGATTTATCTTCACGTTCTGAGGGCGGGAAAACTGAGATATACAATAGAATTCTTTCCATCCTGAGAAATGGCATAATTATTGGTGATAAGAAGTTTGAATTTCTGGCATTCTCATCGAGTCAGTTACAGGAAAATTCTCTCTGGATGTTTGCTCCTACAACTACTGGATGTACTGCCACTCACATAAGGGAATGGATGGGAGATTTTAGCATGATAAGAAATGTGGCTAAATATGCGGCTAGGCTGGGACAATCTTTTGGTTCATCTACTGAAACTCTAAGTGTCAACAGGAGTGAAATTGAAATTATTCCTGATGTGATGTTTAAACATGGTGGAATAGAATATGTCTTTTCTGATGGAATTGGGAAAATATCTCTTGATTTTGCCAGGAAAGTGGCTAAAAAATGTGGTCATAATTCTACACCATCGGCCTTTCAGATTCGGTATGCCGGGTACAAAGGAGTTGTGGCTGTTGACCCAACCTCATCTGTGAAGTTATCACTGAGGAAGAGCATGCACAAATATGATTCAGATAACACCAAATTGGATGTTTTAGCATGTAGTAAGATCCAGGCTTGTTATCTGAATCGACAGTTGATTACTCTCCTATCCACTCTTGGTGTCAGGGACAGTGTTTTTGAGAAAAAACAAGGAGAAGCTGTTGATCAACTGAACACTATGCTAACAGATTCATTAAAGGCACAAGAGGCTTTGGACTTAATGTCTGCTGGGGAGATCACTAATATTCTGAAGGAGATGCTCATTTGTGGTTACAAGCCTAATGTTGAACCATTTCTTTCAATGATGCTGCAAACATTTAGGGCATCAAAACTGCTGGATTTGCGGCAAAAAACTAGGATAGTTATTCCAATGGGAAGAGCAATGATGGGATGCTTAGATGAAACTAGAACCCTAGAATATGGTCAAGTTTTTGTTCATTTTTCTAAAAATGAGTCCGGGAGGAGTCTTTCAAAATCTTATATAGTTACAGGTAAGGTAGTAGTAGCAAAAAACCCCTGCTTGTACCCAGGTGATGTGCGTGTTTTGAAGGCTGTGAATGTGCCAGCTTTGCACCATATGGTGGATTGTGTTGTTTTTCCTCAAAAAGGTTTCAGACCACATACAAATGAATGTTCGGGGAGTGATCTGGATGGGGACATTTACTTTGTTTGTTGGGATCCTGAATTGATTCCACATAAAACAATCGAACCAATGGACTATACTCCTGCCCCAACTACGCAATTGGATCATGACGAGGTGGAGGAGTATTTTACCAATTACATACTCAATGACAGTCTGGGAATAATTGCCAATGCACACACTGTCTTTGCAGATAGAGAATCTGAAAAGGCAATGTCTGAGCCATGTGTTGAGCTTGCAAAGCTATTCTCAACAGCGGTCGACTTTCCGAAGACCGGTGTCCCAGCTGTTATACCTCAAAAACTTTATGTCAAAGAATATCCAGACTTCATGGAGAAGCCTGACAAACCCACCTATCAGTCGCCTAATGTGATAGGGAAGCTTTTCAGGGAAGTGCAAGGAATTTCAACAAGTGCTGGCTTTATTACATCCTTCACACGGGAAGTGGCTAGACGGTCATATGACTCTGACATGGAATTCGATGGCTTTATGGATTATGTTGATGATGCTTTCCATCACAAGAGCAACTATGACTACAAGTTGGGGAATCTGATGGACTACTATGGGATCAANACCGAAGCCGAAATCCTTGGTGGGAATATTATGAAAATGTCAAAATCTTTCACCAAAAAAAGGGACGCTGAGGCAATTAATATGGCCGTGAAGTCCCTGAGGAAAGAGGCAAGGACTTGGTTCAATGGTAGTAGTAGCGGCATAGATTCCGGGAGCGATGATGCATATGCAAAAGCTTCTGCTTGGTACTATGTTACTTACCATCCAAGTTACTGGGGTTGCTACAATGAAGGTATGGGTAGGGACCATTATATAAGCTTCCCATGGTGTGTTTACCCTCAACTTGTC

Protein Sequence

>Glyur005429s00043774.1
MGKTIKVYGFPSHVIESLVKRFIEHYTGEETVFAIKIRQGKRAFAFIQFTSAKHATDMMSFPDRSLWYGNSYLKVQEAERDVVPRPRTFLNSLNNVKLYFGCQISKGRISVLWKKVNDVTVEFGIGMRKWRFFLFHGDNKYKLELSYENICKIELYQPQGETTKYLLIQLQGAPRIFKMVIPTSANIYEDPLLNYFKDTPDEQWIRAIDFXPCSCIGQSSALCLELPDDQDFPNFRENFAYYEESEKQYALESGXXFSXNPDLVPIVAPPQXIEIPFDILFKVNSLVQHGYLSGSGLXNXFYHMVDPRKVNLEFIEHALEKMYYSKDFCYEPTSWLIDQYKRYLSSNNPPQSPMISLDTGLVYVRRVQITPCKVYFCGPEINVSNRVLRHFNEHINNFLRVSFVDEELDNLYSTDLSSRSEGGKTEIYNRILSILRNGIIIGDKKFEFLAFSSSQLQENSLWMFAPTTTGCTATHIREWMGDFSMIRNVAKYAARLGQSFGSSTETLSVNRSEIEIIPDVMFKHGGIEYVFSDGIGKISLDFARKVAKKCGHNSTPSAFQIRYAGYKGVVAVDPTSSVKLSLRKSMHKYDSDNTKLDVLACSKIQACYLNRQLITLLSTLGVRDSVFEKKQGEAVDQLNTMLTDSLKAQEALDLMSAGEITNILKEMLICGYKPNVEPFLSMMLQTFRASKLLDLRQKTRIVIPMGRAMMGCLDETRTLEYGQVFVHFSKNESGRSLSKSYIVTGKVVVAKNPCLYPGDVRVLKAVNVPALHHMVDCVVFPQKGFRPHTNECSGSDLDGDIYFVCWDPELIPHKTIEPMDYTPAPTTQLDHDEVEEYFTNYILNDSLGIIANAHTVFADRESEKAMSEPCVELAKLFSTAVDFPKTGVPAVIPQKLYVKEYPDFMEKPDKPTYQSPNVIGKLFREVQGISTSAGFITSFTREVARRSYDSDMEFDGFMDYVDDAFHHKSNYDYKLGNLMDYYGIXTEAEILGGNIMKMSKSFTKKRDAEAINMAVKSLRKEARTWFNGSSSGIDSGSDDAYAKASAWYYVTYHPSYWGCYNEGMGRDHYISFPWCVYPQLV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05429	527	9178	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003968 RNA-directed RNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005429s00043774.1	PF05183.7	RdRP	372	929	4.60E-199
Glyur005429s00043774.2	PF05183.7	RdRP	372	929	4.60E-199

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.736
SRR1783600	control	16.852
SRR1783602	moderate drought stress	12.898
SRR1811619	moderate drought stress	13.005

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.654
DRR006520	Root Summer glycyrrhizin high producing strain	46.456
DRR006521	Root Winter glycyrrhizin high producing strain	1.675
DRR006522	Root Winter glycyrrhizin high producing strain	1.709
DRR006523	Root Summer glycyrrhizin low producing strain	66.262
DRR006524	Root Summer glycyrrhizin low producing strain	66.193
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.016
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.744

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.359
SRR2868004	Drought Stress (root)	17.912
SRR2967015	Control (root)	22.527

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.780
SRR9715740	Leaf	4.410
SRR9715741	Leaf	6.228
SRR9715739	Root	7.598
SRR9715742	Root	27.220
SRR9715743	Root	23.014

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.262
SRR8749028	MeJA induced 9h	2.681
SRR8749029	MeJA induced 9h	2.187
SRR8749030	Uninduced	0.375
SRR8749031	Uninduced	0.087
SRR8749032	Uninduced	0.307

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.197
SRR8400027	Control - Root	15.593