Gene detail information of Glyur005423s00046737 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G23600.1 | 6.00E-37 | acetone-cyanohydrin lyase |
| NR | XP_004511978.1 | 3.70E-67 | PREDICTED: methylesterase 3-like [Cicer arietinum] |
| COG | YP_004688377.1 | 3.00E-18 | alpha/beta hydrolase [Cupriavidus necator N-1] |
| Swissprot | tr|O80476|MES2_ARATH | 1.00E-44 | Methylesterase 2 |
| trEMBL | tr|G7K9E5|G7K9E5_MEDTR | 4.00E-66 | Methyl jasmonate esterase {ECO:0000313|EMBL:AES94788.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05423 | 421 | 1180 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005423s00046737.1 | PF12697.2 | Abhydrolase_6 | 9 | 115 | 2.00E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.210 |
| SRR1783600 | control | 3.312 |
| SRR1783602 | moderate drought stress | 6.045 |
| SRR1811619 | moderate drought stress | 6.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.071 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.148 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 31.786 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.200 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.331 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.709 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.361 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.684 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.665 |
| SRR2868004 | Drought Stress (root) | 8.887 |
| SRR2967015 | Control (root) | 14.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.103 |
| SRR9715740 | Leaf | 2.925 |
| SRR9715741 | Leaf | 2.956 |
| SRR9715739 | Root | 4.114 |
| SRR9715742 | Root | 1.773 |
| SRR9715743 | Root | 2.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.328 |
| SRR8749028 | MeJA induced 9h | 31.568 |
| SRR8749029 | MeJA induced 9h | 17.300 |
| SRR8749030 | Uninduced | 40.912 |
| SRR8749031 | Uninduced | 122.305 |
| SRR8749032 | Uninduced | 56.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.884 |
| SRR8400027 | Control - Root | 17.259 |