Gene detail

Gene detail information of Glyur005416s00041472.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05980.2	3.00E-176	DHFS-FPGS homolog B
NR	XP_003616513.1	0	Folylpolyglutamate synthase [Medicago truncatula]
COG	YP_007298356.1	1.00E-52	folylpolyglutamate synthase/dihydrofolate synthase [Thermoanaerobacterium thermosaccharolyticum M0795]
Swissprot	tr\|F4K2A1\|FPGS1_ARATH	0	Folylpolyglutamate synthase {ECO:0000250\|UniProtKB:Q05932, ECO:0000312\|EMBL:CAC80839.2}
trEMBL	tr\|G7K218\|G7K218_MEDTR	0	Folylpolyglutamate synthase {ECO:0000256\|PIRNR:PIRNR038895}

Sequence

Transcript Sequence

>Glyur005416s00041472.1
ATGAAGGACGCTTTGCCGGAGCAGTTCGTAAGAGGGTTAACAAGTGCAAGTTTGCAAGGAAGGGCTCAGATTGTTCCTGACTCACACATCAAGAGTGGATTTCTAACGAAATTTCAAGAAGGTGGCGATGGGTCTCCCAAATCTCAATCTTTGACTCCATATGAAGAAGCATTGGAGGCCTTGTCGTCTTTGATCACTAAACGCACTCGTGCTGATAGTAGCAATATGGGGGATCAGTTTGAGGTGCTATTTGAGTACCTAAAGATGCTAGATTTGGAGGAGCAGATTTCAAATATGAAGATTATCCATGTGGCTGGTACCAAAGGGAAGGGATCTACATGCACCTTCACAGAATCTATATTACGTAACTGCGGTTTTCATACTGGACTCTTTACATCTCCTCACCTCATTGANATCCGAGAAAGATTTCGTTTAAATGGTGTAGAAATCTGTGAAGATAAATTTTTAGCATACTTCTGGTGGTGTTATGATAGATTAANGGAAAAAACTGATGATAATGTTCCAATGCCTACCTATTTTCGTTTCCTCGCTTTACTTGCCTTCAAGATTTTTGCAGCAGAGCAGGTAGATGTTGCTATAATGGAAGTCGGATTAGGTGGCAAATATGATGCAACAAATGTGGTTCAGGCACCTATCGTGTGTGGAATAACTTCCCTTGGGTATGACCACATGGAGATTCTTGGGAATACTCTTGGAGAAATTGCTGGTGAGAAGGCTGGTATCTTCAAGGAGCGGATTCCAGCTTTTACAGTGCCTCAACCTGAAGAAGCCATGCATGTACTTGAAGAGAAGGCTTCGCAATTAAATGTACCTCTTCAAGTGACATCCCCATTAGATGCCAAATTGCTAAATGGTTTAAGACTTGGTCTTGAAGGTGAGCATCAATATTTAAATGCTGGTCTTGCCATTGCACTGTGCTCTACATGGCTGGAAAGGACTGGACATCTTGGAGACACTTACTTGGAACGAACTGACGCTTTGCCAGAGCAGTTCGTAAAAGGGTTAACAAGTGCAAGTTTGCAAGGAAGGGCTCAGATTGTTCCTGACTCACACATCAAGAGTGAAATATCAAATGAACTTGTTTTCTTTTTAGATGGGGCTCATAGTCCTGAAAGCATGGAAGTATGTGCAAGGTGGTTTTCTCTTTCCATCAAAGAAAACAACCCAGACCAAACCTTGTGGCAACCAGATATTTCTAAATCCTCACATGAAGTAGTAAAGATGCACCATGGGGGAAGAGAAGCCCAGAGAAAATCCACTCCGATATTGCTGTTCAATTGTTTGACTGTACGAGATCCTCAGTTGCTTCTTCCTCGCCTGATGGAAACATGTGCTGATCATGGAGTCTATTTCAAGAAGGCGCTCTTTGTACCGAGTTTATCCGTGTATAACAAAGTTGGATCCCAGGCTTTGACACCGATTGATTNCAAAGTTGATCTGTCATGGCAGTTCACTCTTCAAAAAGTGTGGGAAAATCTCATGCAAGGCAACAAAGGTAAAAATACTGACATTGTTTCTGAAGAACTAAAAGATGATATGGAAATGAGTGCCAGTAATTGTGAACACAGTGCAGTGTTTCCCTCATTGCCAATGGCAATCAAATGGCTCAGGGACAGAGTGCAACAAAATCAGTCAGTCCTTGTGACTGGTTCTTTACATCTTGTTGGTGACGTGTTGAAATTAGTCAAGAAGTGATTCTTTCTTTGGGCAAATTTGAAGTCTCCTTCAATCTAATTTGGCAACACATCAAGTTCTGACGTTATTCCAGACGGTGAGTTTTCTCTGGCATTAACACAGTCCATGAGTTTTCTGAGAAGTCCCAACACAATGTCATCGACCCAACAAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05416	2613	9175	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01930	FPGS	EC:6.3.2.17	Folate biosynthesis	map00790
			Antifolate resistance	map01523

Gene Ontology

biological_process

GO:0009058 biosynthetic process

GO:0009396 folic acid-containing compound biosynthetic process

molecular_function

GO:0004326 tetrahydrofolylpolyglutamate synthase activity

GO:0005524 ATP binding

GO:0016874 ligase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005416s00041472.1	PF08245.7	Mur_ligase_M	104	263	2.00E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.550
SRR1783600	control	2.531
SRR1783602	moderate drought stress	3.586
SRR1811619	moderate drought stress	3.618

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.328
DRR006520	Root Summer glycyrrhizin high producing strain	5.379
DRR006521	Root Winter glycyrrhizin high producing strain	1.137
DRR006522	Root Winter glycyrrhizin high producing strain	1.090
DRR006523	Root Summer glycyrrhizin low producing strain	5.168
DRR006524	Root Summer glycyrrhizin low producing strain	4.686
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.598
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.384

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.485
SRR2868004	Drought Stress (root)	7.451
SRR2967015	Control (root)	6.112

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.277
SRR9715740	Leaf	38.115
SRR9715741	Leaf	27.423
SRR9715739	Root	0.803
SRR9715742	Root	3.684
SRR9715743	Root	4.094

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.204
SRR8749028	MeJA induced 9h	2.797
SRR8749029	MeJA induced 9h	2.082
SRR8749030	Uninduced	3.411
SRR8749031	Uninduced	1.444
SRR8749032	Uninduced	1.351

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.986
SRR8400027	Control - Root	9.821