Gene detail

Gene detail information of Glyur005408s00043263

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G25930.1	0	Protein kinase family protein with leucine-rich repeat domain
NR	XP_003549165.1	0	PREDICTED: receptor-like protein kinase HSL1-like [Glycine max]
COG	YP_004775215.1	4.00E-58	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9SGP2\|HSL1_ARATH	2.00E-177	Receptor-like protein kinase HSL1 (Precursor)
trEMBL	tr\|K7MIT5\|K7MIT5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G33580.2}

Sequence

Transcript Sequence

>Glyur005408s00043263.1
TCTCAATTTGTTCTGACTTTGTTCCTCTTGCTGAGCCATACAAAGTCTCAGTCTAATGTCTATGATGAGGAACATGCAGTTTTGTTAAATATAAAGCAATACTTTCAAAACCCATCTTTTCTTAGCCATTGGACTCAATCAAATACCTCATCTCACTGTTCTTGGCCAGAAATCACTTGTAAAAATGCCTCTGTCACTGGACTCACTCTCTCCAACAACAAAATCAACCAAACAATTCCATCTTTCATCTGTGATGAACTCAAGAACCTCACACACCTTAACTTCAGCATTAACTTCATCCCTGGTGATTTCCCAACACACCTCTATGGTTGTTCCAAGCTGGAGTACCTAGACCTCTCCATGAACAACTTTGATGGCAAGATTCCCCAAGATATTGACCGTTTGGGTGCTAATTTGCAATATCTCAACCTTGGTTCAACCAATTTCTATGGTGATATTCCTTCTAGTATTGGCAAGTTAAAGCAATTGAGAGAACTCAGGCTTCGGTATTGTTTATTCAATGGTACTGTCCCTGATGAGATTGGTGACTTGTCCAATCTTGAGTACTTGGATTTGTCCACTAACACCATGTTCCCTTCTTGGAAGTTGCCATGGGGCAGGTTGACCAAGTTGAAAAATTTGAAGTTGCTTTATGTTTATGGCTCAAACTTGGTTGGTGAAATCCCTGAAAACATTGGGGATATGGTGGCTTTGGAGGAGTTGGATATATCACGGAATAGTTTAACTGGAGGAATTCCAAGTGGGTTGTTCATGATGAAGAATCTGACCAAAATGTTCCTTTACCGAAACAAGCTATCTGGGGAGATACCTGGTGAGGTTGAAGCATTGAATTTGACTGGTCTTGATCTTTCAGATAACAATCTCACAGGGAACATACCAGAAGGTATTGGAAAGCTTCAGAAGTTGACATGGTTGACTTTGTCTATCAATAACTTATCTGGGGTGATACCAGAAAGTTTAGGCCTTCTTCCAGCACTAGTTGATTTCCGCGTGTTTCTCAACAATCTATCAGGTGCTGTTCCTCCCGAATTCGGCCGTTACTCAAGGCTCAAGACCTTTCTGATTTCATCTAATAGTCTTGTTGGGAAGTTACCAGAGAATTTGTGCTATCATGGTGAGTTACTTAACTTGACAGTTTATGAAAATAATCTTAGTGGTAAGTTGCCAGAATCACTAGGGAATTGCAGTAGCTTGATGGAATTTAAAATTCACAACAATGAGTTTTCTGGTACTATTCCTAGTGGTCTTTGGAGATCTTTCAATTTGTCACTTTTCATGGTAAGCCACAATAAGTTCTCTGGTGTGCTTCCTGAGAGGTTGTCTTCGAATCTTTCGCGATTCGAGATCGGGTACAATCAGTTTTCTGGCAGGATTCCAGATGGGGTATCTTCATGGACTAATGTGGTGGTGTTTGATGCCAGTAAGAACAACTTCAATGGAAGTATTCCACAAGGGGTAACATCACTTCCCAAGCTAACAACTCTATTGCTTGATCAGAACCAACTCACCGGGGAACTTCCGTCAGATATAATATCATGGAATTCACTAGTGACTCTAAATTTGAGCCAAAACCAACTAACTGGTCAAATCCCAGATGCAATTGGGAAGTTACCTGTTCTTAGTCAACTTGACCTCTCAGAAAATGAACTCTCTGGCAAAGTTCCTTCTCAACTTCCAAGACTCACCAATCTCAATCTTTCCTCTAATCACTTGACAGGAAGGATTCCAATACTGAACCTTACTTTGTGCAATTCTGGTACTCAAAGTACAAGCAAGGGTTCATCTTGGTCTGTTGGTTTGATTATAGGCCTTGGGGTAGTAGCAGCCTTGTTNTTGGTTTCTTTGGTAACTCTCTTGATTGTAAGAGTTCACAGGAAAAGAAAGCAGGCTTTGGATAACTCATGGAAGCTCATTTCCTTTCAGAGGCTGAGTTTCACAGAATCAAGCATTGTCTCATCAATGACAGAACATAACATCATTGGNCGCGGCGGATACGGCACGGTGTACCGAGTTGATGTCAATGGTTTAGGCTATGTTGCTGTGAAAAAGATTTGCAATGACAGAAAGTTGGACCATAAGCTTGAGAGTTCATTTAAAGCAGAAGTTAAGATACTGAGCAGTATTCGTCACAACAACATTGTGAGGTTGTTGTGTTGTATCTCCAATGAGGATTCTATGCTCCTTGTCTATGATTACATGGAAAACCAAAGTCTAGATAAGTGGCTGCACGTGAAGGGTAACAATAAGCCATCAGGTTTGTCAGGCTCAGTGCAGCATGTGGTCTTTGATTGGCCAAAGAGGTTGAACATAGCTATTGGGGCTGCTCAAGGTTTGAGCTACATGCATCATGATTGTTCACCACCTATTGTTCATAGAGATGTGAAAACAAGCAACATTCTTTTGGATGCTCAATTCAATGCAAAAGTTGCTGATTTTGGACTGGCTAGGATGCTAATCAAGCAAGGGGAAATTAACACAATAGTCAGTGAAAAGATTGATGTGTTTAGCTTTGGGGTTGTCCTATTGGAGTTGACAACTGGTAAGGAGGCAAATTATGGAGACCAACACTCATCCCTTGCAGAGTGGGCATGGAGTCACACTCTTTTAGGAACCAATGTAGAAGAACTGCTTGACAAAGATGTCATGGAAGCTAGTTACTTGGATGAGATGTGTACGGTGTTCAAACTTGGAGTCATGTGTACTGCAACACTTCCTGCTAATAGGCCTTCCATGAAGGAGGTACTACAGATCTTGGTCAGCTGTAGAGAACCATTTGTTTATGGAGAGAAAAAAGTTGGCCTTGGCCAATACCATGATATTGTTCCCCTTCTGAAGAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05408	3066	6587	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005408s00043263.1	PF08263.7	LRRNT_2	24	60	2.00E-06
Glyur005408s00043263.1	PF13516.1	LRR_6	111	130	0.28
Glyur005408s00043263.1	PF00560.28	LRR_1	238	257	0.47
Glyur005408s00043263.1	PF00560.28	LRR_1	284	306	0.035
Glyur005408s00043263.1	PF13855.1	LRR_8	522	578	4.00E-08
Glyur005408s00043263.1	PF00069.20	Pkinase	663	833	1.70E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.232
SRR1783600	control	2.170
SRR1783602	moderate drought stress	2.627
SRR1811619	moderate drought stress	2.626

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.723
DRR006520	Root Summer glycyrrhizin high producing strain	5.035
DRR006521	Root Winter glycyrrhizin high producing strain	5.807
DRR006522	Root Winter glycyrrhizin high producing strain	5.659
DRR006523	Root Summer glycyrrhizin low producing strain	3.710
DRR006524	Root Summer glycyrrhizin low producing strain	4.107
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.169
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.007

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.521
SRR2868004	Drought Stress (root)	24.519
SRR2967015	Control (root)	19.264

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.741
SRR9715740	Leaf	13.033
SRR9715741	Leaf	22.614
SRR9715739	Root	1.592
SRR9715742	Root	6.998
SRR9715743	Root	5.437

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.462
SRR8749028	MeJA induced 9h	60.208
SRR8749029	MeJA induced 9h	42.626
SRR8749030	Uninduced	31.938
SRR8749031	Uninduced	71.481
SRR8749032	Uninduced	53.373

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.009
SRR8400027	Control - Root	8.442