Gene detail information of Glyur005407s00043703 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31330.1 | 1.00E-08 | photosystem I subunit F |
| NR | XP_010098481.1 | 1.89E-11 | Photosystem I reaction center subunit III [Morus notabilis] |
| Swissprot | tr|P46486|PSAF_FLATR | 1.00E-12 | Photosystem I reaction center subunit III, chloroplastic (Precursor) |
| trEMBL | tr|W9R7D8|W9R7D8_9ROSA | 7.00E-12 | Photosystem I reaction center subunit III {ECO:0000313|EMBL:EXB75141.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05407 | 8783 | 8929 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005407s00043703.1 | PF02507.10 | PSI_PsaF | 6 | 49 | 4.50E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.023 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.027 |
| SRR2868004 | Drought Stress (root) | 13.525 |
| SRR2967015 | Control (root) | 17.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.378 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.045 |
| SRR8749028 | MeJA induced 9h | 1.209 |
| SRR8749029 | MeJA induced 9h | 1.077 |
| SRR8749030 | Uninduced | 1.445 |
| SRR8749031 | Uninduced | 0.149 |
| SRR8749032 | Uninduced | 0.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.549 |
| SRR8400027 | Control - Root | 0.543 |