Gene detail information of Glyur005404s00043771 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G68070.1 | 6.00E-31 | Zinc finger, C3HC4 type (RING finger) family protein |
| NR | XP_006576759.1 | 1.26E-129 | PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform X2 [Glycine max] |
| Swissprot | tr|Q8GUU2|RIE1_ARATH | 4.00E-44 | E3 ubiquitin protein ligase RIE1 |
| trEMBL | tr|K7KEK0|K7KEK0_SOYBN | 5.00E-130 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G27500.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05404 | 3567 | 7582 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.706 |
| SRR1783600 | control | 5.739 |
| SRR1783602 | moderate drought stress | 6.698 |
| SRR1811619 | moderate drought stress | 6.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.372 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.386 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.568 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.624 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.143 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.446 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.583 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.410 |
| SRR2868004 | Drought Stress (root) | 11.699 |
| SRR2967015 | Control (root) | 11.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.991 |
| SRR9715740 | Leaf | 4.579 |
| SRR9715741 | Leaf | 5.440 |
| SRR9715739 | Root | 5.906 |
| SRR9715742 | Root | 6.055 |
| SRR9715743 | Root | 6.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.434 |
| SRR8749028 | MeJA induced 9h | 5.264 |
| SRR8749029 | MeJA induced 9h | 2.837 |
| SRR8749030 | Uninduced | 1.493 |
| SRR8749031 | Uninduced | 1.032 |
| SRR8749032 | Uninduced | 1.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.436 |
| SRR8400027 | Control - Root | 9.860 |