Gene detail information of Glyur005404s00043770 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_003624871.1 | 3.30E-54 | 50S ribosomal protein [Medicago truncatula] |
| Swissprot | tr|P11891|PSRP5_PEA | 9.00E-46 | 50S ribosomal protein 5, chloroplastic (Precursor) |
| trEMBL | tr|B7FHB7|B7FHB7_MEDTR | 1.00E-54 | Uncharacterized protein {ECO:0000313|EMBL:AES81089.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05404 | 1288 | 1984 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.794 |
| SRR1783600 | control | 13.971 |
| SRR1783602 | moderate drought stress | 16.433 |
| SRR1811619 | moderate drought stress | 14.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.867 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.064 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.370 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.457 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.407 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.170 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 60.873 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 59.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.168 |
| SRR2868004 | Drought Stress (root) | 10.190 |
| SRR2967015 | Control (root) | 16.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 65.108 |
| SRR9715740 | Leaf | 79.523 |
| SRR9715741 | Leaf | 40.314 |
| SRR9715739 | Root | 18.599 |
| SRR9715742 | Root | 11.518 |
| SRR9715743 | Root | 12.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.576 |
| SRR8749028 | MeJA induced 9h | 2.497 |
| SRR8749029 | MeJA induced 9h | 3.635 |
| SRR8749030 | Uninduced | 1.752 |
| SRR8749031 | Uninduced | 0.032 |
| SRR8749032 | Uninduced | 0.681 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.390 |
| SRR8400027 | Control - Root | 28.700 |