Gene detail

Gene detail information of Glyur005371s00044048

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62950.2	5.00E-22	RNA polymerase II, Rpb4, core protein
NR	KHN37481.1	2.70E-41	hypothetical protein glysoja_050153, partial [Glycine soja]
trEMBL	tr\|K7MSM7\|K7MSM7_SOYBN	3.00E-42	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G34191.1} (Fragment)

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05371	1749	6185	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0044237 cellular metabolic process

molecular_function

GO:0000166 nucleotide binding

GO:0003824 catalytic activity

GO:0003899 DNA-directed RNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005371s00044048.1	PF03874.11	RNA_pol_Rpb4	90	161	9.10E-08

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	1.577
SRR1783600	control	0.837
SRR1783602	moderate drought stress	1.455
SRR1811619	moderate drought stress	1.242

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.318
DRR006520	Root Summer glycyrrhizin high producing strain	0.296
DRR006521	Root Winter glycyrrhizin high producing strain	1.185
DRR006522	Root Winter glycyrrhizin high producing strain	0.643
DRR006523	Root Summer glycyrrhizin low producing strain	1.518
DRR006524	Root Summer glycyrrhizin low producing strain	0.283
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.536
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.277

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.202
SRR2868004	Drought Stress (root)	0.434
SRR2967015	Control (root)	0.314

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.793
SRR9715740	Leaf	0.879
SRR9715741	Leaf	0.943
SRR9715739	Root	0.165
SRR9715742	Root	0.743
SRR9715743	Root	0.203

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.617
SRR8749028	MeJA induced 9h	2.844
SRR8749029	MeJA induced 9h	3.232
SRR8749030	Uninduced	4.642
SRR8749031	Uninduced	4.205
SRR8749032	Uninduced	2.901

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.501
SRR8400027	Control - Root	0.630