Gene detail information of Glyur005369s00045013 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48160.1 | 3.00E-39 | DP-E2F-like 1 |
| NR | ACU19499.1 | 2.99E-76 | unknown [Glycine max] |
| Swissprot | tr|Q8LSZ4|E2FE_ARATH | 3.00E-46 | E2F transcription factor-like E2FE |
| trEMBL | tr|C6TCE7|C6TCE7_SOYBN | 1.00E-76 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU19499.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05369 | 5184 | 6147 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | E2F-DP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005369s00045013.1 | PF02319.15 | E2F_TDP | 22 | 87 | 3.70E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.138 |
| SRR1783600 | control | 2.367 |
| SRR1783602 | moderate drought stress | 0.775 |
| SRR1811619 | moderate drought stress | 0.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.633 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.580 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.715 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.907 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.199 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.279 |
| SRR2868004 | Drought Stress (root) | 3.487 |
| SRR2967015 | Control (root) | 4.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.774 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.264 |
| SRR9715739 | Root | 0.103 |
| SRR9715742 | Root | 0.603 |
| SRR9715743 | Root | 0.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.863 |
| SRR8749028 | MeJA induced 9h | 3.764 |
| SRR8749029 | MeJA induced 9h | 2.284 |
| SRR8749030 | Uninduced | 0.261 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.638 |
| SRR8400027 | Control - Root | 5.610 |