Gene detail information of Glyur005367s00046074 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G45600.1 | 1.00E-50 | tetraspanin3 |
| NR | NP_001241564.1 | 1.28E-69 | uncharacterized protein LOC100788977 [Glycine max] |
| Swissprot | tr|Q9M1E7|TET3_ARATH | 8.00E-62 | Tetraspanin-3 |
| trEMBL | tr|C6TJJ5|C6TJJ5_SOYBN | 5.00E-70 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G15790.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05367 | 2511 | 3568 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005367s00046074.1 | PF00335.15 | Tetraspannin | 1 | 92 | 3.10E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.691 |
| SRR1783600 | control | 5.906 |
| SRR1783602 | moderate drought stress | 8.421 |
| SRR1811619 | moderate drought stress | 8.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.891 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.053 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 330.627 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 377.884 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 43.970 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.942 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.943 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.243 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.273 |
| SRR2868004 | Drought Stress (root) | 0.520 |
| SRR2967015 | Control (root) | 1.370 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.074 |
| SRR9715740 | Leaf | 0.423 |
| SRR9715741 | Leaf | 0.134 |
| SRR9715739 | Root | 0.073 |
| SRR9715742 | Root | 0.881 |
| SRR9715743 | Root | 0.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.238 |
| SRR8749028 | MeJA induced 9h | 0.521 |
| SRR8749029 | MeJA induced 9h | 0.184 |
| SRR8749030 | Uninduced | 0.246 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.422 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.330 |
| SRR8400027 | Control - Root | 0.751 |