Gene detail information of Glyur005358s00047270 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | KEH29234.1 | 3.81E-29 | extensin-like repeat protein [Medicago truncatula] |
| COG | YP_007067976.1 | 4.00E-07 | hypothetical protein Cal7507_4787 [Calothrix sp. PCC 7507] |
| Swissprot | tr|Q40375|PRP2_MEDTR | 5.00E-25 | Repetitive proline-rich cell wall protein 2 (Precursor) |
| trEMBL | tr|A0A072UHK0|A0A072UHK0_MEDTR | 1.00E-29 | Extensin-like repeat protein {ECO:0000313|EMBL:KEH29234.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05358 | 7680 | 8039 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005358s00047270.1 | PF02095.10 | Extensin_1 | 27 | 36 | 0.17 |
| Glyur005358s00047270.1 | PF02095.10 | Extensin_1 | 37 | 46 | 0.008 |
| Glyur005358s00047270.1 | PF02095.10 | Extensin_1 | 47 | 56 | 0.0082 |
| Glyur005358s00047270.1 | PF02095.10 | Extensin_1 | 57 | 66 | 0.012 |
| Glyur005358s00047270.1 | PF02095.10 | Extensin_1 | 67 | 76 | 0.11 |
| Glyur005358s00047270.1 | PF02095.10 | Extensin_1 | 72 | 80 | 4.3 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.894 |
| SRR1783600 | control | 10.933 |
| SRR1783602 | moderate drought stress | 37.081 |
| SRR1811619 | moderate drought stress | 38.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.997 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.365 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.192 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.598 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.512 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.397 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.824 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.033 |
| SRR2868004 | Drought Stress (root) | 14.091 |
| SRR2967015 | Control (root) | 6.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 61.402 |
| SRR9715740 | Leaf | 49.697 |
| SRR9715741 | Leaf | 70.290 |
| SRR9715739 | Root | 1.930 |
| SRR9715742 | Root | 8.783 |
| SRR9715743 | Root | 6.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.340 |
| SRR8749028 | MeJA induced 9h | 8.431 |
| SRR8749029 | MeJA induced 9h | 7.147 |
| SRR8749030 | Uninduced | 2.164 |
| SRR8749031 | Uninduced | 0.213 |
| SRR8749032 | Uninduced | 2.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.937 |
| SRR8400027 | Control - Root | 5.376 |