Gene detail information of Glyur005356s00044926 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G53180.1 | 1.00E-49 | glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases |
| NR | KEH42140.1 | 7.04E-86 | glutamate-ammonia ligase-like protein [Medicago truncatula] |
| COG | YP_005530289.1 | 1.00E-27 | glutamine synthetase [Amycolatopsis mediterranei S699] |
| trEMBL | tr|A0A072VVL5|A0A072VVL5_MEDTR | 3.00E-86 | Glutamate-ammonia ligase-like protein {ECO:0000313|EMBL:KEH42140.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05356 | 932 | 2457 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005356s00044926.1 | PF00120.19 | Gln-synt_C | 1 | 63 | 3.60E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.118 |
| SRR1783600 | control | 2.955 |
| SRR1783602 | moderate drought stress | 3.049 |
| SRR1811619 | moderate drought stress | 3.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.743 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.709 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.836 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.315 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.805 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.803 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.518 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.525 |
| SRR2868004 | Drought Stress (root) | 13.642 |
| SRR2967015 | Control (root) | 15.766 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.126 |
| SRR9715740 | Leaf | 11.400 |
| SRR9715741 | Leaf | 14.467 |
| SRR9715739 | Root | 3.268 |
| SRR9715742 | Root | 3.665 |
| SRR9715743 | Root | 3.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.547 |
| SRR8749028 | MeJA induced 9h | 16.948 |
| SRR8749029 | MeJA induced 9h | 26.631 |
| SRR8749030 | Uninduced | 28.163 |
| SRR8749031 | Uninduced | 16.849 |
| SRR8749032 | Uninduced | 28.852 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.228 |
| SRR8400027 | Control - Root | 11.677 |