Gene detail information of Glyur005352s00044199 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G34160.1 | 1.00E-22 | Alba DNA/RNA-binding protein |
| NR | KHN01341.1 | 5.61E-33 | Hypothetical protein glysoja_009547 [Glycine soja] |
| Swissprot | tr|O22969|Y2416_ARATH | 2.00E-28 | Uncharacterized protein At2g34160 |
| trEMBL | tr|K7M3X9|K7M3X9_SOYBN | 2.00E-33 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G44090.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05352 | 8951 | 9394 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.396 |
| SRR1783600 | control | 14.306 |
| SRR1783602 | moderate drought stress | 10.321 |
| SRR1811619 | moderate drought stress | 12.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.790 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.041 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.632 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.939 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.437 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 26.576 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.935 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.452 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 33.041 |
| SRR2868004 | Drought Stress (root) | 28.292 |
| SRR2967015 | Control (root) | 28.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.762 |
| SRR9715740 | Leaf | 22.912 |
| SRR9715741 | Leaf | 8.616 |
| SRR9715739 | Root | 9.989 |
| SRR9715742 | Root | 7.348 |
| SRR9715743 | Root | 8.485 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 65.861 |
| SRR8749028 | MeJA induced 9h | 21.119 |
| SRR8749029 | MeJA induced 9h | 53.038 |
| SRR8749030 | Uninduced | 16.797 |
| SRR8749031 | Uninduced | 20.777 |
| SRR8749032 | Uninduced | 49.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 42.967 |
| SRR8400027 | Control - Root | 39.408 |