Gene detail

Gene detail information of Glyur005332s00040069.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G35530.1	1.00E-120	basic region/leucine zipper transcription factor 16
NR	KEH20260.1	0	bZIP transcription factor family protein [Medicago truncatula]
Swissprot	tr\|P23922\|HBP1A_WHEAT	1.00E-69	Transcription factor HBP-1a
trEMBL	tr\|A0A072U370\|A0A072U370_MEDTR	0	BZIP transcription factor family protein {ECO:0000313\|EMBL:KEH20260.1}

Sequence

Transcript Sequence

>Glyur005332s00040069.2
TTCTTGGTACAGAATGTTCTAGTGTAAATTTTTGTAAGGTACTTATATGAAAGCATGGGTAGCAGTGACGTCGATAAAAACTTAAAAGAGAAGGAGTCTAAGACACCTCCAGCTACATCACAGGAGCAGGCTTCCACAACCACAACAACTGGCGCTGGAACAGTTAATCCTGACTGGCCTAACTTTCAGGCATATTCTCCAATACCTCCACATGGATTCATGGCCTCAAGTCCCCAAGCCCACCCATATATGTGGGGTGTCCAGCATATTATGCCTCCCTATGGCACCCCGCCACATCCCTATGTTGCAATGTATCCCCATGGTGGCATATATGCTCATCCNTCCATTCCTCCGGGATCTTATCCTTTTAGTCCTTTTGCCATGCCTTCTCCGAATGGNATTGTGGATGCTTCGGGAAATACTCCAGGCAGCATTGAAGCTGATGGTAAGCCTCCTGAGGTGAAGGAAAAATTACCAATCAAAAGATCAAAAGGAAGTTTGGGTAGTTTGAATATGATTACAGGAAAAAAAAATGAACTTGGTAAAACATCAGGGGCATCTGCCAATGGAATTCATTCCAAAAGCGGTGAGAGTGAAAGTGAAGGTACTAGTGAAGGAAGTGATGAAAATTCCCAGAATGACTCTCACTTGAAATCCGGGGAGAGGCAGGATTCTTTTGAAGATGAACCGTCTCAAAATGGCACTTCAGTGCATGCTCCTCAAAATGGTGTACTTAATACACCTCATACAGTTGTTAACCAAACTATGTCTAACGTACCTATGTCTGCTGTTGGTCCCCTCACAGCAGTTCCTGGTCCCACAACTAATTTGAATATAGGAATGGATTATTGGGGCACACCAACTTCATCTGCCATTCCTGCAATGCATGGAAAGGTTCCTTCTACCGCAGTTGCTGGAGGAGTGGTTAATGCTGGGTCACGAGATGGTGTCCAGCCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGACAAAGGCGAAAGCAGTCTAATAGGGAATCTGCACGCAGATCCAGGTTGCGAAAGCAGGCCGAGTGTGATGAACTAGCTCAGCGTGCTGAGGCTTTGAAAGAAGAAAATGCATCTCTCCGGTCAGAAGTGAGCCGGATCAGGAGTGATTACGAGAAGATACTCTCTGAGAATGCAGCACTCAAGGAGAGACTCGGGGAGATACCGAGGAACGAGGATCCTAGATCGGGCCAGAATGATCAGCATGTTGGTGATGAAACTCAACCGAGTGGTCAGACAGAGGATGTGCAGGGTGCTCCTTAGATCCATGTTGCTTTTCAGCAAGATAACCTAACCAAATAGCAACTGAGTTATTGTTTTTGGATAGCTTCTAGTTAAAATTGTATCAAAGGTGATCATGTGTAATATTTGGATCGATTTATGTTATATTATCCGTCCTTCCTCGATTGTAGGTAGTGTGTGAATACTGGGTCATTCCTTATGTGCTGCTTCAACAGTTAGTGTTGGCACTAAGAAATGTGGTTAATGAACTTTGATATTGTCCATTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05332	3	6304	-

Gene family

Gene family	subfamily
Transcription Factors Family	bZIP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005332s00040069.2	PF07777.6	MFMR	1	197	5.70E-67
Glyur005332s00040069.2	PF00170.16	bZIP_1	308	370	9.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.403
SRR1783600	control	14.582
SRR1783602	moderate drought stress	13.862
SRR1811619	moderate drought stress	15.933

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.714
DRR006520	Root Summer glycyrrhizin high producing strain	21.974
DRR006521	Root Winter glycyrrhizin high producing strain	25.433
DRR006522	Root Winter glycyrrhizin high producing strain	25.337
DRR006523	Root Summer glycyrrhizin low producing strain	18.093
DRR006524	Root Summer glycyrrhizin low producing strain	17.234
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.193
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.641

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.986
SRR2868004	Drought Stress (root)	25.870
SRR2967015	Control (root)	24.551

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.452
SRR9715740	Leaf	22.372
SRR9715741	Leaf	22.648
SRR9715739	Root	7.294
SRR9715742	Root	15.763
SRR9715743	Root	13.278

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.033
SRR8749028	MeJA induced 9h	21.002
SRR8749029	MeJA induced 9h	12.896
SRR8749030	Uninduced	18.267
SRR8749031	Uninduced	12.617
SRR8749032	Uninduced	14.720

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.787
SRR8400027	Control - Root	15.104