Gene detail

Gene detail information of Glyur005331s00046486.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37330.1	9.00E-159	cytochrome P450, family 81, subfamily D, polypeptide 4
NR	ACJ85868.1	0	unknown [Medicago truncatula]
COG	YP_004303682.1	8.00E-39	cytochrome P450 [Polymorphum gilvum SL003B-26A1]
Swissprot	tr\|Q6WNQ8\|C81E8_MEDTR	0	Cytochrome P450 81E8 {ECO:0000303\|PubMed:14617078}
trEMBL	tr\|B7FM85\|B7FM85_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK47557.1}

Sequence

Transcript Sequence

>Glyur005331s00046486.1
ATCAAAATTAAAACATCACTTTAACAATTTCTCATACTTAATCGACCAATTAATCAAAATGAGCTCATTGTTCCTCTCTTACACCCTGCTCTCTGTTCTTCTCCTCGTGACTCTGAAGTTCCTGTTCCCAACAACAAGACTCAGGAACCTTCCACCATGTCCACCATGTCTTCCCATAATCGGCAACATCCACCAACTCAAACACCCACTCCACCGCACCTTCCAACGCCTCTCCGAAAAACACGGCAAGGTCTTCTCCCTGTGGTTCGGTTCCCGCTTCGTGGTCGTCGTTTCATCCCCGTCCGTCGTCCAAGAATGCTTCACCAAAAACGACATCGTCTTGGCTAACCGTCCCCCGCTTCTCGCCGCAAAGCACATCGGCTACAACTTCACGGCTGTGACGGTGGCCCCTTACGGCGACCACTGGCGTAACGTCCGGCGCATCATCTCCCTCGAGGTCCTCTCAACGCACCGTCTCAACTCATTTATAGGAATCAGAAGGGACGAGATCACGAGGCTGGTGAAGAACCTGGCGCGTGGCTCACACGAGGGCTTCGCTGAGGTGGAACTGAAAACGAAGCTTTCGGAGATGACTTTTAACTCGATAATGAGAATGATATCTGGGAAGAGGTACTATGGAGAGGACTGTGATGACGTGGAGGAAGCGAGGCAGTTCAGGGAGCTCGCGAAAGAGCTTATTTCATTCGGAGGGTCAAGCAACCCTGCTGAGTTTGTTGGCGTTCTTAGGTGGTTTGATTTTGGTAATTTGGAGAAGAGTCTGAAGAGGATTGGTAGCAGATGCGATGCGTTGTTGCAGGGACTCATTGAGGAGCATCGAAGCGGGAAGCAGAGCGGCGATACCATGATCGATCATCTCTTGACTCTGCAACAATCACAGCCAGAGTATTATACGGACCAAATCATCAAAGGGATTGTTCTGGTTATGATTCTTGGAGGAACAGAGACATCAGCTACAACTTTGGAATGGGCAATGTCTGCATTACTAAATCATCCAGAAGTGCTGAAGAAGGCAAGGGATGAAATAGATGCTCAAATAGGACAAGATCGCCTAGTGGAAGAGTCAGACATTTCAAGACTTCCCTACCTCCAAAACATAATCCACGAGACATTTCGTTTGCATCCTGCATTCGCATTGTTGGCACCCCATTTCTCTTCAAAAGATTGCACCATAGGAGGTTATCATGTCCCACAAGGCACCATTTTGTTGGTTAATGCTTGGGCCATCCATAGGGATCCTCAATTGTGGAGCGACCCTACACAGTTCAAGCCAGAGAGGTTTGAGAAAGAAGGGGAAGCTGATAAGTTGATCCCATTTGGGTTGGGAAGAAGGGCTTGTCCTGGAGCAAATTTGGGGCAGCGTACAGTGAGTTACACTTTGGGCTTACTGATTCAATGTTTCGAGTGGAAGAGAATGAGTGAGGAAGAAATTGATATGACTGAAGGCAAAGGGGCCACTACGCCAAAGCTAATTCCCTTGAAGGCCATGTGTCAAGCCCGCTCAAATATCACCAACAAGGTTTTTTTGAAAGCCGGTGAAGAAATGAAATAATCATTTTCTAGCAGTTTATACGAAGATCTATATGTATGATGAAGTATAGTGTTTTTCTTCCACTCTAAACACAATTATCTGTGTTTGAATAAGCCTGTTAAGTTGGCAACCTGAGTCATCATACCTGTAATGTAGTAGCTTGAATCTTGAGAGTGAGGGAGAGAGAGGCATACAATACAAAGATTATGTGTGTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05331	3677	5668	-

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP81D4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005331s00046486.1	PF00067.17	p450	32	476	4.10E-96

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.447
SRR1783600	control	10.654
SRR1783602	moderate drought stress	7.447
SRR1811619	moderate drought stress	7.450

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.815
DRR006520	Root Summer glycyrrhizin high producing strain	9.400
DRR006521	Root Winter glycyrrhizin high producing strain	2.291
DRR006522	Root Winter glycyrrhizin high producing strain	2.210
DRR006523	Root Summer glycyrrhizin low producing strain	54.947
DRR006524	Root Summer glycyrrhizin low producing strain	54.395
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.888
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.877

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.702
SRR2868004	Drought Stress (root)	63.456
SRR2967015	Control (root)	15.933

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.337
SRR9715740	Leaf	18.681
SRR9715741	Leaf	28.388
SRR9715739	Root	9.546
SRR9715742	Root	15.274
SRR9715743	Root	14.007

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.185
SRR8749028	MeJA induced 9h	49.381
SRR8749029	MeJA induced 9h	30.527
SRR8749030	Uninduced	443.768
SRR8749031	Uninduced	542.818
SRR8749032	Uninduced	138.377

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.040
SRR8400027	Control - Root	1.413