Gene detail

Gene detail information of Glyur005326s00046152

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16080.1	9.00E-33	carboxyesterase 17
NR	KEH32986.1	0	CXE carboxylesterase [Medicago truncatula]
COG	YP_005068995.1	7.00E-22	putative lipase [Arthrospira platensis NIES-39]
Swissprot	tr\|Q9FG13\|CXE15_ARATH	2.00E-48	Probable carboxylesterase 15
trEMBL	tr\|A0A072UUF6\|A0A072UUF6_MEDTR	0	CXE carboxylesterase {ECO:0000313\|EMBL:KEH32986.1}

Sequence

Transcript Sequence

>Glyur005326s00046152.1
ATGGGCTATGAGAAGAAGGTAGTGGACGAGGTGTCCGGTTGGCTCAGAATCTACACAGATGGTTCAGTGGACCGGACATGGACCGGACCGCCAGAGGTCAAGTTCATGATTGAACCGGTCCCTCCCCATGAACAATTCATCGAAGGAGTCGCCACTCGTGATGTGACCACCACCACTCACGACGATTCCAGCCANCGTGTCCGGCTCTACTTGCCGGAGAAAACCCACAAGGACACTCACAAGCTACCCATCCTCCTCCACTTCCAAGGGGGCGGGTTCTGCATNAGCGAACCAGATTGGTTCATGTACTACCAAGTCTACACCCGGTTCGTCCGGTCCACCCGGTCCATCTGCGTCTCCCCGTTCCTCCGCCGTGCCCCAGAGCACCGCCTCCCTGCCGCTATTGACGACGGCTTCGCGGCACTCCAGTGGCTCCAATCGGTGGCTAGGGGAGAGTCGCATGAGCCATGGCTCAAGGAGCACGGGGATTTNAACCGGGTTTTCCTCATAGGAGACAGCTCCGGAGGAAACCTCGTGCATGAGGTTGCCTCCAAAGCCGGTTCAATGGACTTGAGCCCGGTTCGTGTGGCGGGAGGAATTCCCATTCACCCGGGTTTTGTCCGGTCAAGCCGGAGCCNGTCCGAGATGGAAATGCCACAATCACCATTTCTAACATTGGACATGTTGGACAAATTCCTCAGCCTGGCACTCCCANTTGGGAGCAANAAGGACCATCCCATCACATGCCCCATGGGAGCGGCGGCACCGCCGCTNGAGAGCTTGAAGTTGCCGCCGCTCCTCCTGTGCGTGGCGGAGATGGACCTTGTGAGGGACACGGAGATGGAGTACTATGAGGCAATGAAGAAGGCCAATAAAGAAGTGGAGCTGTTTGTGAGCGAAGGAATGACACACAGTTTCTATCTCAACAAGATTGCTGTGGATCTGGACCCCACTGTTAGTGCCCAAATGGATGCTCTCATTGAAAGGGTCAGAGACTTCATTCAGAAGCACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05326	3701	4714	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005326s00046152.1	PF07859.8	Abhydrolase_3	85	307	1.40E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.828
SRR1783600	control	0.838
SRR1783602	moderate drought stress	0.713
SRR1811619	moderate drought stress	0.627

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.374
DRR006520	Root Summer glycyrrhizin high producing strain	0.422
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.327
DRR006524	Root Summer glycyrrhizin low producing strain	1.593
DRR006525	Leaf Summer glycyrrhizin high producing strain	58.282
DRR006526	Leaf Summer glycyrrhizin high producing strain	57.001

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.868
SRR2868004	Drought Stress (root)	2.684
SRR2967015	Control (root)	1.574

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	424.794
SRR9715740	Leaf	204.556
SRR9715741	Leaf	391.622
SRR9715739	Root	23.407
SRR9715742	Root	86.544
SRR9715743	Root	66.951

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.364
SRR8749028	MeJA induced 9h	0.684
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.304
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.116
SRR8400027	Control - Root	5.586