Gene detail

Gene detail information of Glyur005324s00043890

Functional Annotation

Database	Orthologs	E value	Annotation
NR	XP_006362817.1	1.02E-35	PREDICTED: extensin-2-like [Solanum tuberosum]
trEMBL	tr\|M0ZJJ1\|M0ZJJ1_SOLTU	4.00E-36	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400002054}

Sequence

Transcript Sequence

>Glyur005324s00043890.1
ATGTGGTCCAATAAGCAGCAGAAGCCANAACTCTCCTTCGACGTGGACTCACACGCATCCAACACTTCCCACCCTCTAACACCCTCTACTCTCTCCACCGACAAAAAACTATACCTATACCTTTCCAAAACCCCCATCAAGCTCCTTAAGAACCCTCTCTTGCCCTTTTGCCGCCACGGTCATCCCATAGTTCAACACCTCGAACTCGCTCTGTGGAACCCGGAGAGTGAAGAAGTAGTGCGACTCGTCGAGCTTAATCGCCGACACGTCTTTTGCCAACGGCCACTGGACTTTGTTGTCGATGCGGGAGATAACCGCCACCACGTCGTCCCCTTCCCTCAGGCTTGCTATGGTGAGGTCTCCCAACTCCAGAGATTGAAACTGAGAGAGATTGAAAGAAAAGTTGCCGTCTTGATCGAATCCAACTCCGCGTTCCACCACCCACTTGGGTCGCATTGGTCCAAAAAACTCAAACTTATTCAAAACGTACAAGTACAAGTCCCCTCCTCCTCCAAAGAAGGAGTACAAGTACCCCTCACCTCCACCCCCAGTGTACAAGTACAAGTCTCCTCCTCCACCACCAAAGAAGGAGTACAAGTACCCATCTCCCCCACTCCAGTATATGAATACAAGTCTCCCCCTCCTCCAAAGAAGGAATACAAGTACCCATCTCCACCACCTCCAATATACAAGTACAAGTCTCCCCCTCCCCCAGTGTACAAGTACAAGTCCCCTCCTCCTCCAAAGAAGGAATACAAGTACCCATCTCCACCACCACCAGTATACAAGTACAAGTCTCCTCCTCCTCCACCAAAGAAGGAGTACAAGTACCCATCTCCTCCACCTCCAGTATATAAATACAAGTCTCCCCCTCCACCAGTATACAAGTACAAGTCTCCTCCTCCTCCAAAGAAGGAGTACAAGTACCCATCTCCACCACCTCCCGTATACAAATATAAGTCTCCTCCTCCTCCTGTCTATTCACCACCTCCACCACACTATGTNTACGCATCACCTCCTCCTCCAGTCTATTCCCCACCCCCACCCCATTACATCTATGCATCACCTCCTCCCCCTTACCACTACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05324	4458	8271	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009664 plant-type cell wall organization

molecular_function
GO:0005199 structural constituent of cell wall

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005324s00043890.1	PF04554.8	Extensin_2	203	248	1.50E-08
Glyur005324s00043890.1	PF04554.8	Extensin_2	236	283	1.10E-05
Glyur005324s00043890.1	PF04554.8	Extensin_2	271	315	2.60E-06
Glyur005324s00043890.1	PF04554.8	Extensin_2	303	342	0.00019

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	121.343
SRR1783600	control	125.075
SRR1783602	moderate drought stress	57.332
SRR1811619	moderate drought stress	53.313

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.842
DRR006520	Root Summer glycyrrhizin high producing strain	1.512
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.015
DRR006524	Root Summer glycyrrhizin low producing strain	2.192
DRR006525	Leaf Summer glycyrrhizin high producing strain	134.265
DRR006526	Leaf Summer glycyrrhizin high producing strain	133.061

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	311.812
SRR2868004	Drought Stress (root)	326.426
SRR2967015	Control (root)	177.717

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	232.157
SRR9715740	Leaf	110.722
SRR9715741	Leaf	305.151
SRR9715739	Root	39.037
SRR9715742	Root	33.491
SRR9715743	Root	31.656

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	93.464
SRR8749028	MeJA induced 9h	231.388
SRR8749029	MeJA induced 9h	122.836
SRR8749030	Uninduced	549.945
SRR8749031	Uninduced	485.777
SRR8749032	Uninduced	225.858

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	144.779
SRR8400027	Control - Root	105.435