Gene detail information of Glyur005323s00043857 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G33410.1 | 7.00E-32 | SUPPRESSOR OF AUXIN RESISTANCE1 |
| NR | XP_006594152.1 | 2.62E-55 | PREDICTED: nuclear pore complex protein Nup160-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9C811|NU160_ARATH | 2.00E-35 | Nuclear pore complex protein NUP160 {ECO:0000303|PubMed:21189294} |
| trEMBL | tr|K7LZQ2|K7LZQ2_SOYBN | 1.00E-55 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G20540.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05323 | 3393 | 7373 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.025 |
| SRR1783600 | control | 1.849 |
| SRR1783602 | moderate drought stress | 3.519 |
| SRR1811619 | moderate drought stress | 3.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.259 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.739 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.250 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.170 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.885 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.797 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.581 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.566 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.637 |
| SRR2868004 | Drought Stress (root) | 6.682 |
| SRR2967015 | Control (root) | 7.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.217 |
| SRR9715740 | Leaf | 4.096 |
| SRR9715741 | Leaf | 2.961 |
| SRR9715739 | Root | 0.626 |
| SRR9715742 | Root | 3.741 |
| SRR9715743 | Root | 4.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.965 |
| SRR8749028 | MeJA induced 9h | 15.492 |
| SRR8749029 | MeJA induced 9h | 8.122 |
| SRR8749030 | Uninduced | 3.166 |
| SRR8749031 | Uninduced | 2.785 |
| SRR8749032 | Uninduced | 3.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.855 |
| SRR8400027 | Control - Root | 7.044 |