Gene detail

Gene detail information of Glyur005305s00044374

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27290.1	3.00E-115	S-locus lectin protein kinase family protein
NR	XP_006592581.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max]
Swissprot	tr\|O81832\|Y4729_ARATH	8.00E-139	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|K7KXE1\|K7KXE1_SOYBN	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur005305s00044374.1
ATGAGAACCTCTGCTTCACTAGTAGATAGTTTAACAACGAATCAGTCTATCATAGATGGTGAGACTTTAGTTTCAGCCGATGGAACTTTTGAAGCGGGTTTCTTCAGCCCCGGAAGTTCAAAAGGTCGATACTTGGGTGTATGGTACACGAGAATGTCCCCAATAAAAGTTGTATGGGTAGCCAACAGGGAAACACCACTCCAGAACAGATCCGGAGTTTTAAAAGTCAACGAAAAGGGAATTCTTATGCTTCTCGATGGCAAAAACAGCACTGCATGGTCCTCCAATACATCAAGCAGCAAAATAGTAAACAATCCAATTGTACAGCTCTTGGACTCGGGAAACCTTGTGGTGAAAAATGGACAGGACATTATTAACGAGGACAAGTTTTTGTGGCAAAGTTTTGACTATCCCTGCGATACATTATTACCAGGAATGAAGATTGGGTGGAACTTGGTAACGGGTCTAAATAGATTTGTATCATCTTGGAGAAGCGTAGATGATCCTGCTGTGGGAGAGTATTCTGTTAAAATTGACCCCAGAGGATATCCACAAGTTGTTGCACTCAAGGGATCTGTCATAACTACTAGAGCAGGATCTTGGAATGGGATTGCTTTCACGGGATACCCAATTTATAAACTCAAACAAATGTCTAGTTGGGAATTTGTGTTGAATGAAGAAGAGGTGTATTTTAGGTACGAACTCCTTGATGGGTCGATTTTCTCCATGCAGTCATTGACCCCCTCAGGCAACCCCCAGCGTTTGGTTTTCAATAGTAAAACAAGAAGCCAGGAAGTTTTCCCAAATAACCAGGGAGACCAGTGTGAAACCTATGCCACATGTGGTGCAAATGCTATATGCCATGTGGGTGATAACTCACCCACTTGTGAATGCCTGAAAGGGTTTGTGCCCACGTTTCCTGAAGAATGGAATATTTCATTTTGGTCCAATGGCTGTGTTCGAAAGACCAAGTTGGATTGTAATTACAGAGATGGATTCAGGAAGTACCAAAACATGAAATTACCCGACACGGCTTCCTCATGGTATAGTAAGACCATAGACCTCGGGGAGTGTCAAAATTTATGTCTAAAAAACTGTTCTTGTACATCATATGCAAATTTGGATATCCGTAACGGTGGAAGTGGTTGTCTACTTTGGTTTGATGATCTGATTGACATGAGGGAATTCTCTCACCGGGGACAAGACCTTTACATCAGAGTCCATGCTTCAGCGTTAGGTCATGTTGCAGTCAATGGCCGTGTTAAAACTCTGGTAGGGATCGCAGTTGGTGTGATTATTTGTGGATTAACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05305	6925	8576	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0048544 recognition of pollen

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005305s00044374.1	PF01453.19	B_lectin	56	169	5.00E-32
Glyur005305s00044374.1	PF00954.15	S_locus_glycop	197	305	1.50E-23
Glyur005305s00044374.1	PF08276.6	PAN_2	327	393	1.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.409
SRR1783600	control	0.365
SRR1783602	moderate drought stress	1.488
SRR1811619	moderate drought stress	1.096

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.064
DRR006520	Root Summer glycyrrhizin high producing strain	0.123
DRR006521	Root Winter glycyrrhizin high producing strain	0.255
DRR006522	Root Winter glycyrrhizin high producing strain	0.207
DRR006523	Root Summer glycyrrhizin low producing strain	0.032
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.349
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.460

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.335
SRR2868004	Drought Stress (root)	0.484
SRR2967015	Control (root)	0.589

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.784
SRR9715740	Leaf	1.476
SRR9715741	Leaf	5.958
SRR9715739	Root	0.436
SRR9715742	Root	1.635
SRR9715743	Root	1.568

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.658
SRR8749028	MeJA induced 9h	1.054
SRR8749029	MeJA induced 9h	0.209
SRR8749030	Uninduced	1.494
SRR8749031	Uninduced	0.751
SRR8749032	Uninduced	0.520

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.105
SRR8400027	Control - Root	2.422