Gene detail information of Glyur005301s00043748 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41410.1 | 1.00E-40 | Calcium-binding EF-hand family protein |
| NR | XP_004493430.1 | 1.03E-105 | PREDICTED: probable calcium-binding protein CML36-like [Cicer arietinum] |
| Swissprot | tr|P30188|CML35_ARATH | 1.00E-56 | Probable calcium-binding protein CML35 |
| trEMBL | tr|G7KRQ4|G7KRQ4_MEDTR | 1.00E-91 | Uncharacterized protein {ECO:0000313|EMBL:AFK35504.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05301 | 7768 | 8474 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005301s00043748.1 | PF13499.1 | EF-hand_7 | 71 | 126 | 3.70E-08 |
| Glyur005301s00043748.1 | PF13833.1 | EF-hand_8 | 153 | 202 | 5.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 53.511 |
| SRR1783600 | control | 50.944 |
| SRR1783602 | moderate drought stress | 40.037 |
| SRR1811619 | moderate drought stress | 39.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 212.582 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 224.905 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 49.599 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 50.565 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 376.260 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 342.299 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 82.713 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 77.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 68.457 |
| SRR2868004 | Drought Stress (root) | 114.607 |
| SRR2967015 | Control (root) | 158.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 209.498 |
| SRR9715740 | Leaf | 49.247 |
| SRR9715741 | Leaf | 99.587 |
| SRR9715739 | Root | 128.843 |
| SRR9715742 | Root | 72.391 |
| SRR9715743 | Root | 76.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 132.563 |
| SRR8749028 | MeJA induced 9h | 105.843 |
| SRR8749029 | MeJA induced 9h | 73.600 |
| SRR8749030 | Uninduced | 36.347 |
| SRR8749031 | Uninduced | 8.241 |
| SRR8749032 | Uninduced | 80.410 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 53.878 |
| SRR8400027 | Control - Root | 59.430 |