Gene detail information of Glyur005301s00043746 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G41410.1 | 2.00E-08 | Calcium-binding EF-hand family protein |
| NR | XP_004493430.1 | 1.81E-47 | PREDICTED: probable calcium-binding protein CML36-like [Cicer arietinum] |
| Swissprot | tr|Q9SS31|CML36_ARATH | 4.00E-10 | Probable calcium-binding protein CML36 |
| trEMBL | tr|V7CYZ4|V7CYZ4_PHAVU | 3.00E-34 | Uncharacterized protein {ECO:0000313|EMBL:ESW34126.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05301 | 4659 | 6319 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005301s00043746.1 | PF13202.1 | EF-hand_5 | 84 | 105 | 4.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.572 |
| SRR1783600 | control | 18.527 |
| SRR1783602 | moderate drought stress | 16.493 |
| SRR1811619 | moderate drought stress | 15.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.676 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 51.478 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.746 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.617 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 87.329 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 108.100 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.731 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.798 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.767 |
| SRR2868004 | Drought Stress (root) | 6.319 |
| SRR2967015 | Control (root) | 6.852 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.863 |
| SRR9715740 | Leaf | 20.300 |
| SRR9715741 | Leaf | 24.889 |
| SRR9715739 | Root | 27.594 |
| SRR9715742 | Root | 20.756 |
| SRR9715743 | Root | 24.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.070 |
| SRR8749028 | MeJA induced 9h | 14.782 |
| SRR8749029 | MeJA induced 9h | 7.464 |
| SRR8749030 | Uninduced | 2.488 |
| SRR8749031 | Uninduced | 4.172 |
| SRR8749032 | Uninduced | 5.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.387 |
| SRR8400027 | Control - Root | 14.788 |