Gene detail

Gene detail information of Glyur005290s00041800

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13720.1	2.00E-85	Uncharacterised protein family (UPF0114)
NR	XP_004499941.1	7.76E-154	PREDICTED: uncharacterized protein LOC101507820 [Cicer arietinum]
COG	YP_004168018.1	1.00E-17	hypothetical protein Nitsa_1011 [Nitratifractor salsuginis DSM 16511]
trEMBL	tr\|I3SM88\|I3SM88_LOTJA	2.00E-150	Uncharacterized protein {ECO:0000313\|EMBL:AFK41380.1}

Sequence

Transcript Sequence

>Glyur005290s00041800.1
CGCCATATGATCTTATAGTAAAAAAGCTTTAGAGAGTATAGTCAAACTATAGTACAGCTTCAATGGCTCTTTACTGTCACACCTTCCTCTCTCCCTCTACACCCTCTCTTTCTCTTCACATCCACCAACGTCCCTCCCATCTTCTTCCCCGTCGAGTTTCCTATCCAAATGCTTCCTTAAGCTCCTCTTCCTCCCCTGAATCCAAAGCATCATCATCACCACAAAGTGTGCCATCTTCAACTACTACTACGACTACACCATCTTCATCCACCCCTTTTGTTGAGTCTAGGCCACCTGAGCCTCCCTTCAACTATGCACTCGCCAACCCCAATGGCAACCCAATTCTTAGGATGGTTCGAAATACTGAGTCTTCCATTGAAAGGGTCATTTTTGACTTCCGTTTCTTGGCACTCCTTGCTGTTGGAGGTTCCTTGGCTGGCTCACTCTTGTGCTTTCTAAATGGTTGTGTTTATATTGTTGATGCATACAAAGTCTATTGGGGAAGCTGTGTCAAAGGAGTTCACACTGGAAAGATGGTTCTGCGGCTGGTTGAAGCAATTGATGTTTACCTTGCTGGTACAGTTATGTTGATTTTTGGGATGGGCTTATATGGATTGTTCATTAGCAACACACCTCCTGATGTGCCACCTTCTGTAGACCGTGCCCTTAAAGGATCCTCTCTCTTTGGAATGTTTGCTTTGAAGGAGAGGCCAAAGTGGATGAAAATCAGCTCACTTGATGAACTGAAGACAAAAGTGGGGCATGTTATTGTCATGATTCTTCTCGTGAAAATGTTTGAGAGGAGCAAAATGGTTCACATTGCCACTGGGTTGGATTTACTAAGCTATTCAGTCTGTATTTTCTTGTCATCCGCATCTTTGTATATCCTTCATAACCTGCATAAGGGCGAGTAGAATGTAGTATGCATTGTATTGTTCTCAATCCATAGCTGTAAGTGAAAACTCGCATGATCTAGAAAATTATTACTGTTGAAGCCTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05290	1966	4572	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005290s00041800.1	PF03350.11	UPF0114	108	248	1.00E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	46.738
SRR1783600	control	46.805
SRR1783602	moderate drought stress	68.498
SRR1811619	moderate drought stress	67.925

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	120.738
DRR006520	Root Summer glycyrrhizin high producing strain	118.589
DRR006521	Root Winter glycyrrhizin high producing strain	29.288
DRR006522	Root Winter glycyrrhizin high producing strain	28.070
DRR006523	Root Summer glycyrrhizin low producing strain	166.185
DRR006524	Root Summer glycyrrhizin low producing strain	167.167
DRR006525	Leaf Summer glycyrrhizin high producing strain	382.697
DRR006526	Leaf Summer glycyrrhizin high producing strain	379.896

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.672
SRR2868004	Drought Stress (root)	6.913
SRR2967015	Control (root)	19.463

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	114.910
SRR9715740	Leaf	197.922
SRR9715741	Leaf	166.744
SRR9715739	Root	10.104
SRR9715742	Root	36.763
SRR9715743	Root	29.597

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.235
SRR8749029	MeJA induced 9h	0.182
SRR8749030	Uninduced	0.063
SRR8749031	Uninduced	0.062
SRR8749032	Uninduced	0.341

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.615
SRR8400027	Control - Root	17.402