Gene detail information of Glyur005287s00047093 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38050.1 | 2.00E-45 | 3-oxo-5-alpha-steroid 4-dehydrogenase family protein |
| NR | AFK45432.1 | 1.09E-72 | unknown [Lotus japonicus] |
| Swissprot | tr|Q2QDF6|DET2_GOSHI | 3.00E-63 | Steroid 5-alpha-reductase DET2 |
| trEMBL | tr|I3SYU0|I3SYU0_LOTJA | 4.00E-73 | Uncharacterized protein {ECO:0000313|EMBL:AFK45432.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05287 | 2081 | 3486 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09591 | DET2 | EC:1.3.1.22 | Brassinosteroid biosynthesis | map00905 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.932 |
| SRR1783600 | control | 12.915 |
| SRR1783602 | moderate drought stress | 13.840 |
| SRR1811619 | moderate drought stress | 13.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.262 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.187 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.384 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.534 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.479 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.132 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.574 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.005 |
| SRR2868004 | Drought Stress (root) | 3.224 |
| SRR2967015 | Control (root) | 3.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.321 |
| SRR9715740 | Leaf | 1.337 |
| SRR9715741 | Leaf | 1.794 |
| SRR9715739 | Root | 6.288 |
| SRR9715742 | Root | 2.706 |
| SRR9715743 | Root | 2.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.056 |
| SRR8749028 | MeJA induced 9h | 0.990 |
| SRR8749029 | MeJA induced 9h | 0.332 |
| SRR8749030 | Uninduced | 0.305 |
| SRR8749031 | Uninduced | 0.361 |
| SRR8749032 | Uninduced | 0.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.216 |
| SRR8400027 | Control - Root | 4.984 |