Gene detail information of Glyur005286s00042044 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17030.1 | 3.00E-59 | expansin-like B1 |
| NR | AFK45939.1 | 1.01E-114 | unknown [Medicago truncatula] |
| Swissprot | tr|O23547|EXLB1_ARATH | 8.00E-72 | Expansin-like B1 (Precursor) |
| trEMBL | tr|I3T097|I3T097_MEDTR | 4.00E-115 | Uncharacterized protein {ECO:0000313|EMBL:AFK45939.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05286 | 1139 | 8015 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005286s00042044.1 | PF03330.13 | DPBB_1 | 64 | 126 | 6.70E-06 |
| Glyur005286s00042044.1 | PF01357.16 | Pollen_allerg_1 | 196 | 265 | 8.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.841 |
| SRR1783600 | control | 0.794 |
| SRR1783602 | moderate drought stress | 1.889 |
| SRR1811619 | moderate drought stress | 1.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.977 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.746 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.351 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.296 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.564 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.579 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.221 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.007 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.373 |
| SRR2868004 | Drought Stress (root) | 8.405 |
| SRR2967015 | Control (root) | 5.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.966 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.092 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.015 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.633 |
| SRR8749028 | MeJA induced 9h | 2.768 |
| SRR8749029 | MeJA induced 9h | 1.223 |
| SRR8749030 | Uninduced | 3.809 |
| SRR8749031 | Uninduced | 4.247 |
| SRR8749032 | Uninduced | 4.107 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.866 |
| SRR8400027 | Control - Root | 0.773 |