Gene detail information of Glyur005284s00045946 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12730.1 | 5.00E-121 | FASCICLIN-like arabinogalactan 2 |
| NR | BAE71278.1 | 0 | putative fasciclin-like arabinogalactan protein FLA2 [Trifolium pratense] |
| Swissprot | tr|Q9SU13|FLA2_ARATH | 3.00E-153 | Fasciclin-like arabinogalactan protein 2 (Precursor) |
| trEMBL | tr|Q2PES4|Q2PES4_TRIPR | 0 | Putative fasciclin-like arabinogalactan protein FLA2 {ECO:0000313|EMBL:BAE71278.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05284 | 6371 | 7834 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005284s00045946.1 | PF02469.17 | Fasciclin | 50 | 142 | 1.40E-06 |
| Glyur005284s00045946.1 | PF02469.17 | Fasciclin | 211 | 339 | 3.20E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 154.124 |
| SRR1783600 | control | 157.328 |
| SRR1783602 | moderate drought stress | 148.432 |
| SRR1811619 | moderate drought stress | 133.486 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.513 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.048 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.010 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.975 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.536 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.718 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.588 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 37.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 165.014 |
| SRR2868004 | Drought Stress (root) | 108.999 |
| SRR2967015 | Control (root) | 93.139 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 37.439 |
| SRR9715740 | Leaf | 12.753 |
| SRR9715741 | Leaf | 13.673 |
| SRR9715739 | Root | 135.690 |
| SRR9715742 | Root | 76.459 |
| SRR9715743 | Root | 78.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.647 |
| SRR8749028 | MeJA induced 9h | 21.910 |
| SRR8749029 | MeJA induced 9h | 10.908 |
| SRR8749030 | Uninduced | 12.974 |
| SRR8749031 | Uninduced | 3.599 |
| SRR8749032 | Uninduced | 5.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 64.121 |
| SRR8400027 | Control - Root | 83.481 |