Gene detail information of Glyur005271s00044602 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24910.1 | 4.00E-59 | Protein of unknown function (DUF579) |
| NR | KHN14112.1 | 2.29E-146 | hypothetical protein glysoja_033339 [Glycine soja] |
| COG | YP_005070644.1 | 6.00E-23 | TPR domain protein [Arthrospira platensis NIES-39] |
| Swissprot | tr|Q6NMK1|GXM1_ARATH | 3.00E-39 | Glucuronoxylan 4-O-methyltransferase 1 |
| trEMBL | tr|I1K0B9|I1K0B9_SOYBN | 5.00E-141 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G03410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05271 | 7407 | 8506 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005271s00044602.1 | PF04669.8 | Polysacc_synt_4 | 82 | 274 | 1.30E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.045 |
| SRR1783600 | control | 1.112 |
| SRR1783602 | moderate drought stress | 0.985 |
| SRR1811619 | moderate drought stress | 1.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.793 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.585 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.484 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.321 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.686 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.654 |
| SRR2868004 | Drought Stress (root) | 2.391 |
| SRR2967015 | Control (root) | 2.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.458 |
| SRR9715740 | Leaf | 0.214 |
| SRR9715741 | Leaf | 0.252 |
| SRR9715739 | Root | 0.764 |
| SRR9715742 | Root | 0.946 |
| SRR9715743 | Root | 0.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.631 |
| SRR8749028 | MeJA induced 9h | 0.237 |
| SRR8749029 | MeJA induced 9h | 0.344 |
| SRR8749030 | Uninduced | 0.322 |
| SRR8749031 | Uninduced | 0.242 |
| SRR8749032 | Uninduced | 0.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.446 |
| SRR8400027 | Control - Root | 4.605 |