Gene detail information of Glyur005257s00041782 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G34670.1 | 7.00E-31 | Ribosomal protein S3Ae |
| NR | AFK33413.1 | 1.73E-43 | unknown [Lotus japonicus] |
| Swissprot | tr|A5B4K1|RS3A1_VITVI | 2.00E-45 | 40S ribosomal protein S3a-1 {ECO:0000255|HAMAP-Rule:MF_03122} |
| trEMBL | tr|I3RZH1|I3RZH1_LOTJA | 6.00E-44 | 40S ribosomal protein S3a {ECO:0000256|HAMAP-Rule:MF_03122} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05257 | 1496 | 5280 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005257s00041782.1 | PF01015.13 | Ribosomal_S3Ae | 52 | 100 | 3.00E-12 |
| Glyur005257s00041782.1 | PF01015.13 | Ribosomal_S3Ae | 126 | 171 | 4.80E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.962 |
| SRR1783600 | control | 0.518 |
| SRR1783602 | moderate drought stress | 0.328 |
| SRR1811619 | moderate drought stress | 0.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.062 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.056 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.809 |
| SRR2868004 | Drought Stress (root) | 2.102 |
| SRR2967015 | Control (root) | 3.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.288 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.145 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.008 |
| SRR9715743 | Root | 0.146 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.309 |
| SRR8749028 | MeJA induced 9h | 4.234 |
| SRR8749029 | MeJA induced 9h | 2.344 |
| SRR8749030 | Uninduced | 2.426 |
| SRR8749031 | Uninduced | 4.858 |
| SRR8749032 | Uninduced | 2.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.304 |
| SRR8400027 | Control - Root | 0.609 |