Gene detail

Gene detail information of Glyur005255s00047927.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G00360.1	0	cytochrome P450, family 86, subfamily A, polypeptide 2
NR	XP_004503701.1	0	PREDICTED: cytochrome P450 86A2-like [Cicer arietinum]
COG	YP_004448498.1	2.00E-31	monooxygenase [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|O23066\|C86A2_ARATH	0	Cytochrome P450 86A2
trEMBL	tr\|Q2LAK8\|Q2LAK8_SOYBN	0	Cytochrome P450 monooxygenase CYP86A24 {ECO:0000313\|EMBL:ABC68403.1}

Sequence

Transcript Sequence

>Glyur005255s00047927.1
ATGCACGACTGGATCGCAGACAATCTCCACGCGTGCGGCGGCACGTACCAAACGTGCATCTGCGCCCTCCCCTTCCTTGCCAGGAGACAGTGCCTCGTGACGGTCACGTGCGACCCCAAGAACCTGGAGCACATCCTCAAGCTCCGCTTCGACAACTACCCCAAGGGCCCAACGTGGCAGGCCGCGTTCCACGACCTTCTCGGGGAGGGAATCTTCAACTCCGACGGCGACACGTGGCTGTTCCAGCGTAAGACNGCCGCACTGGAATTCACCACCCGAACCCTTCGCCAAGCCATGGGTCGGTGGGTAAACCGAGCCATCAAGAACCGGTTTTGCCCAATCTTAGCCGCGGCTCAGGAAGAAAAGAACCCGGTGGATCTCCAAGACCTCCTTCTAAGGCTCACCTTCGACAACATTTGCGGGTTGGCTTTCGGTCAAGACCCGCAGACGCTATCCGCGGGTCTTCCAGAAAACGGGTTCGCGCTCTCCTTCGACCACGCCACCGAAGCCACACTCCAACGCTTCATCTTGCCGGAGATCGCGTGGAAGCTGAAGAAGTGGCTCCGCCTCGGAATGGAGGTGAGTCTCACCCGAAGCCTCAAACACATCGACCAATACCTCTCCAACATCATCCAAAATCGCAAGCTGGAGCTCCTCAACAAACAACAACAACAACAACAACAGATTAATGGCGGTGGCGGTGGCGGTGGCGGTGGTGGCGGTGGGGTCCTCCACGACGACCTGCTTTCCCGATTCATGAAGAAGAAGGAATCCTACTCGGACCAGTTCCTCCAGCAGGTGGCGCTCAACTTCATCCTCGCCGGGAGGGACACATCATCGGTGGCGCTTAGCTGGTTCTTCTGGCTTTGCACAGTGAACCCTTCCGTGGAGGAAAAAATCCTGATCGAGCTCTGCACCGTTCTGATGGAGACACGTGGCGGGGAGGTCTCCACGTGGACGGATGAGCCTCTGGCTTTTGAGGAGGTTGATCGTTTGGTGTACCTCAAGGCCGCGCTATCGGAGACGTTGCGGCTTTACCCCTCCGTGCCGGAGGACTCCAAGCACGTGGTAAACGACGACGTTTTGCCCAACGGTACCTTCGTTCCCGCTGGTTCAATGGTGACCTATTCGATTTACTCCGTCGGGAGGATGAAGTTCATTTGGGGAGAGGATTGCCTCGAGTTCAAGCCGGAGCGGTGGCTAACCGCCGACGGCGACAANATTCANCTGCAAGACTCTTACAAGTTCGTGTCGTTCAACGCGGGACCAAGGATTTGTTTNGGAAAGGACTTGGCATACCTGCAGATGAAGTCCATCGCCGCNGCGGTGCTGCTCCGCCACCNCCTCACGGTGGCGCCGGGACACCGCGTCGAGCAGAAGATGTCGTTGACGCTGTTCATGAAGTACGGGCTGAGGGTGAATGTGCACCCTAGGGACCTCGGGCCGGTGCTGGAAAAGATCACAACCAATAAGGGTGGTGCTGTTGCTTTCCTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05255	6980	8476	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP86A2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15398	CYP86A4S	EC:1.14.-.-	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005255s00047927.1	PF00067.17	p450	30	465	1.70E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.252
SRR1783600	control	1.236
SRR1783602	moderate drought stress	1.407
SRR1811619	moderate drought stress	1.380

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.870
DRR006520	Root Summer glycyrrhizin high producing strain	0.647
DRR006521	Root Winter glycyrrhizin high producing strain	0.759
DRR006522	Root Winter glycyrrhizin high producing strain	0.864
DRR006523	Root Summer glycyrrhizin low producing strain	0.369
DRR006524	Root Summer glycyrrhizin low producing strain	0.369
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.733
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.974

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.340
SRR2868004	Drought Stress (root)	1.651
SRR2967015	Control (root)	1.799

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.278
SRR9715740	Leaf	12.496
SRR9715741	Leaf	17.457
SRR9715739	Root	0.000
SRR9715742	Root	3.357
SRR9715743	Root	1.686

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.276
SRR8749028	MeJA induced 9h	3.090
SRR8749029	MeJA induced 9h	1.963
SRR8749030	Uninduced	1.105
SRR8749031	Uninduced	1.181
SRR8749032	Uninduced	3.042

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.165
SRR8400027	Control - Root	0.397