Gene detail information of Glyur005246s00043111 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G55060.1 | 8.00E-10 | |
| NR | XP_003617587.1 | 3.40E-13 | Rab3 GTPase-activating protein catalytic subunit [Medicago truncatula] |
| trEMBL | tr|G7K3L4|G7K3L4_MEDTR | 2.00E-13 | Rab3 GTPase-activating protein catalytic subunit {ECO:0000313|EMBL:AET00546.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05246 | 3423 | 6718 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.903 |
| SRR1783600 | control | 4.373 |
| SRR1783602 | moderate drought stress | 4.845 |
| SRR1811619 | moderate drought stress | 3.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.329 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.604 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.694 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.208 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.738 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.340 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.448 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.148 |
| SRR2868004 | Drought Stress (root) | 2.515 |
| SRR2967015 | Control (root) | 2.928 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.623 |
| SRR9715740 | Leaf | 5.034 |
| SRR9715741 | Leaf | 1.606 |
| SRR9715739 | Root | 1.429 |
| SRR9715742 | Root | 1.039 |
| SRR9715743 | Root | 0.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.018 |
| SRR8749028 | MeJA induced 9h | 3.713 |
| SRR8749029 | MeJA induced 9h | 2.344 |
| SRR8749030 | Uninduced | 0.957 |
| SRR8749031 | Uninduced | 0.577 |
| SRR8749032 | Uninduced | 1.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.066 |
| SRR8400027 | Control - Root | 18.663 |