Gene detail

Gene detail information of Glyur005236s00044304.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G43290.1	3.00E-41	WRKY DNA-binding protein 49
NR	KHN40292.1	4.00E-149	Putative WRKY transcription factor 49 [Glycine soja]
Swissprot	tr\|Q9FHR7\|WRK49_ARATH	1.00E-51	Probable WRKY transcription factor 49
trEMBL	tr\|K7L1H5\|K7L1H5_SOYBN	4.00E-149	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G16040.2}

Sequence

Transcript Sequence

>Glyur005236s00044304.1
CTTTTGTGTTCCTCTTGGGGGGCCTAATAAATAAATGGTTTTGAGTCAGCCAATGTCAAAGACAATGATTATGGAGGAAGTAATGATGGGTGGTGCTAATTGGTCAGATATTGGGTCAGAAGATGATGACCTTCTTGTGAGAGAGCTTTTAGATGACGATGGGTCTCCTCCTCTTCTCATGCTTCAACCAGAGGAGTTAACAACTGATATTAATCAACCCAACAACAACAACTACACAAGAGAAGGTTCTTCAAGAGACCAATTAGCCTCCTTTAATAGGCTCATCACCAACATTTACTCAGGGCCTACCATCACAGATATTGAAAATGCTTTATCAGTTACCACCAATAACCAAAGAGACCACTTCCAACAGTTTTCATCAGCCAGAGTTTCCATATTGGAAAGGAGTTTGAGTAAGATTGAGAATAAGTACACCCTGAAAATCAAATGCTTTGGAAATGGGATGGGCGATGATGGATATAAGTGGAGGAAGTATGGGCAGAAATCCATTAAGAATAGCCCAAATCCTAGGAGTTACTANAGGTGCACCAACCCAAGGTGCAGTGCCAAGAAGCAGGTTGAGAGATCCAATGAAGACCCTGACACTCTTATAATCACCTATGAAGGGCTCCACCTACACTTTGCCTACCCGTATTTNCTAGTGGGCCAATCACAACAATCTCATTCCCATCCACCAATCAAGAAGTCCAAGCCCACCTCTTCACAAGCCCAAGACCAAGACCATAAAGGACAGCATACACAAGAAGCCCAAGCTAGTGCTTCTTTGGGCCCAATGTCATCATCATCCACTTTATTGGACTCTCCAGAAGACATGGCCCAAGGTAATTTNGGCTCACAAGGGTTGCTCGAAGACATGGTGCCACTCATGGTTAGGAACCCCACAAACAATGTCAACAGTGATTACTCCAAATTTTCCTGTTCTCCTCCAACATCACCTTCTCTGTGGACTTCTGGTTATTCCACATCCTGTTAAACCGTTGGCTTAAATTCCAGCATTTAGGTTCTAAATTTCTAAATATGTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05236	2251	5101	-

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005236s00044304.1	PF03106.10	WRKY	146	202	3.70E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.268
SRR1783600	control	0.281
SRR1783602	moderate drought stress	0.180
SRR1811619	moderate drought stress	0.177

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	4.816
DRR006522	Root Winter glycyrrhizin high producing strain	4.578
DRR006523	Root Summer glycyrrhizin low producing strain	0.527
DRR006524	Root Summer glycyrrhizin low producing strain	0.500
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.242
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.366

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.576
SRR2868004	Drought Stress (root)	1.796
SRR2967015	Control (root)	2.458

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.398
SRR9715740	Leaf	2.651
SRR9715741	Leaf	1.728
SRR9715739	Root	0.095
SRR9715742	Root	0.355
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.756
SRR8749028	MeJA induced 9h	18.518
SRR8749029	MeJA induced 9h	17.346
SRR8749030	Uninduced	4.887
SRR8749031	Uninduced	3.005
SRR8749032	Uninduced	7.349

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.033
SRR8400027	Control - Root	1.348