Gene detail

Gene detail information of Glyur005232s00041147

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61820.1	5.00E-127
NR	XP_003594549.1	0	MtN19 protein [Medicago truncatula]
trEMBL	tr\|G7IKW9\|G7IKW9_MEDTR	0	Stress up-regulated Nod 19 protein {ECO:0000313\|EMBL:AES64800.2}

Sequence

Transcript Sequence

>Glyur005232s00041147.1
CTCATCTTTTCTCTCTCTCAACATGGTATCAGAGCCTAACAAGAGGCATATTTTTTTCGCAAACTGTGCTCCTCTTCCGGTTTCTGCTCCTCACCACCGTGTCCCTCCCTTTTCCGCGCGTGTTTCCCTATTACCAGTAGCTGCCACTGCTGCCGCTGGAAAAATTTTCCGGCGATTTTTCCAGCCAAACTTATACCATCAAGATCGCGACAAGGCAATCTACAATCTGTTACCTTCAGTTTCCCGGTCGAAGATCTCACGCGCCTTCACGCTCCAAAAACAAGAAGGTCATGCCGTCATGGAATTATTTTGATGCTATCTTATGAACATGAGTTTGATGCTTCCATGGGCAATACTACTACTATTGTTAGTGTCAGGCACACCATACTCATCAGGTGATTTTGGGAAGACCAAAAACAATGTTAAATCAGCTGTTTTTCTGTCTCCCAAGTTTGAACTAGGTCCAGGATCTGTTGCAAACAAAAATTATTATGATGTTGGGTTTCCAAGGGGTCATATTGCACTCAAGAGTTTCAATGCTGAAGTGGTTGATGAAGNAGGGAATTCTGTACCTCTCCAAGAAACTTATCTCCACCATTGGGTTGTTATCAAATACCACCAACCNAAAAATGTGACNGGCAATAATAACCAATCAGGTATTGTTATAATGAGAAACAGTGGCTTTTGCCAGGATAATACTCTTGGACAGTANTATGGCCTTGGATCTGAAACAAGAAAAACAGATACATATATTCCAGACCCTTTTGGGATAGAAGTGGGTAATCCTGCAGAAATTCCAGAAGGGTATGAGGAGAAATGGTTGTTCAATGTCCATGCCATTGATACAAGGGGTGTGGAAGATAGGATGGGGTGTACTGAGTGCAGGTGTGACTTGTATAATGTCACAAAGGATGAAAATGGCAACCCTTTGAGTTCAGGTTATGGAGGAGGTTTGCAGTGTTGTCCTGATAACACCAATTGCAGGTTAAAAAAAGGCTTTGTGGGCCCAAAGAGAAGCTTCTACCTGAAATACACAGTGATGTGGGTTGATTGGGANAGTTTTGTGGTGCCTGCTAAGGTTTATATATTTGATGTGACCGATAGTTTGAAAAAGTCAGATAAGTCCAAAGGAATGAGTCTAAACCATGATTGCAAGACTGAGTATNAAGTCGAACCCTGCAGCAAAGGCCATGTGGATGGTAGTGGTTGTGTTGATGTCAAGAGATCAAGCATCCCAATGCAAAAGGGAGGTTATGTAATCTATGGTGTTGGTCATCAGCATGCAGGTGCAATTGGATCAACTCTATATGCACAGGATGGGAGGGTTATATGCACTTCAATACCAAAATATGGAAATGGAAAGNAAGCAGGAAATGAGAANGGGTATGTNGTNGGAATGTCCACTTGTTACCCTCCACCAGGTTCTATCAAGATAATTGATGGTGAAACTTTAACCCTAGAGGCTAATTACAGCAGCAGCACAAGGCACACTGGTGTAATGGGGCTTTTCTATTTCTTAGTGGCAGAACAGCTACCACACCATGTCTAACATTCCTGTCCTGCTTGATATTCTGTGATGTCTGAATAATGAATATGTNATGGTGAAAAAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05232	545	4993	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005232s00041147.1	PF07712.7	SURNod19	28	406	1.00E-208
Glyur005232s00041147.2	PF07712.7	SURNod19	28	406	1.00E-208

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.552
SRR1783600	control	1.548
SRR1783602	moderate drought stress	1.437
SRR1811619	moderate drought stress	1.456

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.622
DRR006520	Root Summer glycyrrhizin high producing strain	0.790
DRR006521	Root Winter glycyrrhizin high producing strain	0.752
DRR006522	Root Winter glycyrrhizin high producing strain	0.764
DRR006523	Root Summer glycyrrhizin low producing strain	0.458
DRR006524	Root Summer glycyrrhizin low producing strain	0.496
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.100
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.602

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	111.380
SRR2868004	Drought Stress (root)	527.772
SRR2967015	Control (root)	170.803

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.857
SRR9715740	Leaf	2.821
SRR9715741	Leaf	12.481
SRR9715739	Root	0.551
SRR9715742	Root	3.568
SRR9715743	Root	3.024

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	339.539
SRR8749028	MeJA induced 9h	650.283
SRR8749029	MeJA induced 9h	512.122
SRR8749030	Uninduced	1112.725
SRR8749031	Uninduced	1059.412
SRR8749032	Uninduced	586.173

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.632
SRR8400027	Control - Root	17.452