Gene detail

Gene detail information of Glyur005231s00047621

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39210.1	2.00E-179	Major facilitator superfamily protein
NR	XP_003590250.1	0	Nodule-specific protein Nlj70 [Medicago truncatula]
trEMBL	tr\|G7I7D1\|G7I7D1_MEDTR	0	MFS transporter {ECO:0000313\|EMBL:AES60501.1}

Sequence

Transcript Sequence

>Glyur005231s00047621.1
ATGGTATTTTCCAGAGAGCATGGTTTTGGAGGTGGTGGTGGTTGGGGAAACACCAAACTCTTCACCCTCCAAGTCCTAACAGGAAGATGGTTCATGGTGTTTTCCTCATTCATGATCATGTCAGTATCTGGAGCAAGCTACATGTTTGGTCTATATTCCAGAGAAATCAAATCAGTTTTGGGATATGACCAAACTACCCTCACTCTCTTAAGCTTCTTCAAGGACTTGGGAGCCAACATAGGCATTCTCTCAGGCCTAATCAATGAGGTAACACCCCCTTGGGTTGTCCTAACAATTGGTGGGGTTCTCAACTTTTTTGGGTACTTCATGATCTGGCTTGCAGTGACAAGGAAAATTGCCAAGCCCCAAGTTTGGAACATGTGTTTGTACATCTTCATTGGTGCCAATTCTCATTGCTCAACCAACACTGGTGCACTTGTCACAAGTGTGAAGAACTTCCCTGGGACAAGGGGTATTGTCATAGGCCTCTTGAGTGGGTACCTTGGTTTGAGTGCAGCTATCATCACTCAGCTATACTATGCCTTCTATGGAAATGACTCCAAGTCTTTGATCTTGCTCATGGCTTGGTTACCAACTGCTACAACTTTTGTCCTCTTGCCTGTTATTAGGCACCACAAGGGAGTTGAACAGCCAAGTGATTCCAAGGCCTTCTATAATTTTCTCTACATGACTTTAGTCCTTGCAGGGTTCCTCATGGTAATGATCATATTGCAAAAATGTTTAACTTTTACTCAGAGTGAGTATTATGTCACTTCCACTGTGATGCTTCTCTTGCTCATCATGCCAATTGTTGTTGTCATCATGGAAGAACAAAGGATTTGGAAGAGGAAACAGGAGCACACTACTGAAGATCCTCCTCCTAATAAGACTTTGAATGTAACCACAGAGATGCCAAATCTAGAGAAGTCTGCATCTGCAAAGTCTCCTCCCCAAGTGCAAGTTTGGAGAAACATACTCAGGCCACCAAGTAAAGGTGAAGATCATACAATACTTCAAGCCCTTTTCAGCCTTGACATGGTGACCCTTTTCTTAGCCACAACTTGTGGACTTGGTGGAACCCTTACTGTGGTGAACAACTTGAGTCAAATTGGGTTATCTCTAGGATACCCTCCACACAGTATAACCACATTTGTGTCCCTTATGGCAATTTGGATCTATATGGGCAAAATCACACAAGGGGTTGTCTCAGAATATGTCATAGCCAAATTTAAAGTCCCTAGACCTATCATGCTCACATTGATCCTTGTGTTAGCCAGTGTTGGCCACCTTATAATTGCTTTTGATGTCCCAAATGGTCTCTATGCAGCCTCAATTATCATTGGTTTCTGCTTTGGGGCAAATTGGCCATTACTATTTTCCATCATATCTGAACTTTTTGGCCTTAGATATTACTCAACTTTGTACAATGTTGGTTCAGTGGCAAGTCCAATTGGGTCATACTTGTTAAGTGTGAGAGTTGCTGGGCATTTGTATGATAGGGAAGCCACAAGGCAAATGGAAGCATTGGGGTTAAAGAGGAAGCCAGGGGAGGAGTTGAATTGCAATGGGAGTGAGTGCTACAAATTGGCTTTCATCATAATTACTGCAGTTAGCCTTTTTGGGGCACTTGTGTCACTCATTTTGGTGCTTAGGACTAGAGAGTTTTATAAAGGTGACATATACAAGAAGTTTAGAGAGGAAGCTAGAAGTGATGAAACTGAAATGGCTCTAACTCAAAACAGGGTTGGGCCTGCTTCATCAAATGAAGGGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05231	2075	3847	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005231s00047621.1	PF06813.8	Nodulin-like	29	274	2.40E-93

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.904
SRR1783600	control	6.200
SRR1783602	moderate drought stress	3.999
SRR1811619	moderate drought stress	3.881

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.071
DRR006520	Root Summer glycyrrhizin high producing strain	5.047
DRR006521	Root Winter glycyrrhizin high producing strain	0.189
DRR006522	Root Winter glycyrrhizin high producing strain	0.095
DRR006523	Root Summer glycyrrhizin low producing strain	2.164
DRR006524	Root Summer glycyrrhizin low producing strain	2.005
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.041
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.590

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.227
SRR2868004	Drought Stress (root)	0.174
SRR2967015	Control (root)	0.122

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	59.991
SRR9715740	Leaf	69.161
SRR9715741	Leaf	61.878
SRR9715739	Root	3.665
SRR9715742	Root	7.819
SRR9715743	Root	5.446

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.089
SRR8749028	MeJA induced 9h	0.051
SRR8749029	MeJA induced 9h	0.151
SRR8749030	Uninduced	0.090
SRR8749031	Uninduced	0.022
SRR8749032	Uninduced	0.024

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.520
SRR8400027	Control - Root	6.391