Gene detail

Gene detail information of Glyur005218s00039187

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	1.00E-123	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_003605840.1	0	NBS-LRR resistance-like protein 4G [Medicago truncatula]
COG	YP_007098670.1	3.00E-10	leucine-rich repeat (LRR) protein [Chamaesiphon minutus PCC 6605]
Swissprot	tr\|Q40392\|TMVRN_NICGU	4.00E-128	TMV resistance protein N
trEMBL	tr\|G7JUR1\|G7JUR1_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class) {ECO:0000313\|EMBL:AES88037.1}

Sequence

Transcript Sequence

>Glyur005218s00039187.1
ACCGAATGGAAGATGAATCAAAGGAGAAAGGAGAAACCCCTACCCCTCCATCGAGTTCTAGCCGAAAACCCTCCACCGAGTTCGAGTTCCAGCCATAAGTACCAACACCTCCAAATTGTTCAAACGAAGAAGAAGCATAGCATCCGTGTGTTGATGTCGTTCGTGGAGAGAGGGAGTGAGAGAGAAGAGGATAGAGCTGTTCTGGGGGAGTCCCCACCTTTCAAGTCGGTTTTGAGGGGTGGATGTGAGCCCCAGCCGAATTTTAAGATGGTCCCCACCTTTCAAGCCGATTTTGAGGGGTGGATCGCTTCTTCTTCTGCTGGCTCTTCCTTGTTGCGGAAAAATGACGTGTTCATCAGCTTCAGAGGTGAAGACACACGCAGCAACTTCACCAGCCATCTTCACGCGGCCCTGTGCCGTAGCAAAATCAAAACCTACATCGATTACGAGCTTGTAAAGGGTGACCAGATCTCGGAAGCGCTCGCGAAGGCAATAGAGGATTCACACGTGTCGGTGGTGGTGTTCTCCGAAAACTATGCCTCCTCCACTTGGTGCCTTGACGAGCTCACCCACATCATGAATTGCAAAAAGCAGGAACAGAACAACCAGATCGTCGTACCTGTGTTCTACAACGTGGATCCGTCGCATGTACGGAAGCAGAGTGTTGGCAGCAGCTACGGGAATGCTTTTGAGAAGCACGTGCGTAATCCCAAGCACGTGATGAAGGTGAACCAGTGGCGAGAAGCTCTGGCTGAAGTAGCAAGTTTGGCGGGATGGGACTCTCGTAAATATAAACCTTTAGGCTCCGACGGTGGGTCGTGGTGGGATACCTCCAAAGACACTTTGACTCTCAAGTTAGAGATATTCCACCAAAGTGAGGGTAAGGCCGTGGTCCCCCATGGGACAGCGTATCAGGATTATGTGCCCTGTTACAGCAGGATGCTACTCTTGTATCCTCGTGTGGTGGGCTTCATGTGGGCGAGTCAGGTTTGGGGTGGCCCATCCGAAGCTGGTTCTGGGTTTGCCCCAGGCATAGTGGGCCAAGCCCAGGTTGACCCTCGGTTTCACACCAGCGGTGTGAATTCTTTCACAGGGTGTGAACGGATCTGGTTAAAGTTTGTTTTTCACACCTCGGACGTGAATTGCTTCCCAGTTGTGATCGCCTCTGGATTAGGAACAAATTTTTCACGTGTTGTGAATGGCCCTGCATTGCAAGTGGACACCCCACCACCCATCACACACCCCATTTCAATGAAGTGGGGGGAAGTGAGGGGTGTCCCATGGGTGCTTGAATCTGATCTCGTCGACGACATTGTCCAAGATGTGTTGCGAAAACTACAATATAAATATCCAAACGAATCTAAGGGTCTTATTGGAATTGACAAACACTGTGCACGCATTGAATCATTTCTGAGAAAAGGGTCAACAGAAGTTGGAATGATTGGAATTTGGGGTATGGGTGGCATCGGTAAGACAACCATTGCTGCAGCTACATTTGACAATTGCTCTTCTCAATTCGAAGGATGTTGTTTCTTGGAAAATGTAGGAGATGATTCAGACAAGCATGGATTGAAACATTTACGCAATAAACTTGTATCAGTGCTACTGGAGGAAGAAAATCTCCATATGGGCTCAGTCAGATCCGGTTCTAGTTTTTGTAAGAGCAGGCTTAGTCATAAGAAAGTTCTCATTGTGCTTGATGATCTAAGAACTCCACAGCAACTAGATTATCTAGTTGGAGAGCATTCTTGCTTCTTGGGACCAGGGAGCAGAGTCATTCTTACAACTAGAGATAAACATGTGCTTAACAGAGCTGATGAAATTTATGAGGTGAAGCCAATGAACTTTCATGAATCTCTTCAGCTTTTCAGTTTAAATGCTTTCAACAAAGTCCACCAAGATATTGGTTATGAAAAGCTATCAGAAAGTGTGGTCATTTATGCAGATGGCATTCCATTAGCTCTGAAAGTTTTAGGCTCATTGTTTTGTTCCAAAAGTAAAGAAGTTTGGCTAGGTACAATGACAAAACTCAAGAAAATTCCCTGTAAAGAAATTCAGAACATCTTAAGACTGAGTTATGATGGCTTAGATGATACAGAGAAAGAAATATTTCTGGACATTGCATGCTTCTTTAATGGAGAGGATAGGCAACGTGTGACGAGACTATTGGATGCCTGCGGCTTCTATGCCAGTGCTGGTGTAGAGACCCTTTTGGAGAAGTGTCTAATTACTATTTCAAATAACAATGAAATACAAATGCATGCCTTGATACAAGAAATGGGCTGGGAAATTGTTCGCCAAGAATCTACTAAAGACCCTGGGAAACGGAGTCGATTGTATGATCGTGAGGAAGTTTACGATGTGTTGAAAAATAACACGGGCACTAGTGCAATTGAAGGCATGAGCATGGATGTGTCACAAATTAGAGGAATGAAATTGAGCTCTGACATTTTTGCCAAGATGATTAGCCTAAGATTTCTCAGGTTCTACTCTCGTTGGGGTGAGAGATGTAATGTTTCCCTTCCTGCTGGTCTTGAGTCATTGTCTAATAAATTAAGGTATCTCCATTGGAGTGCATATCCTTTGGAGTCTCTACCATCAACTTTTTCTCCTGAGAAACTTGTTGAGCTTTCCATGCCAAACAGTCATGTTCAAAGACTATGGGAAGGAGTCCAGGATCTTGCTAACTTACAGAAATTGGATCTCAGCTGTTCTGAACACTTGATTCAGCTTCCAGATTTCTCCATGGCTCCAAATCTTCAAAGCATTAACCTCTATGGATGTGCAAGGCTGCGTCAGGTTCACCCATCTATTTTATCTCTCAAAAAGCTTGTCAATTTGAACCTGGTTTGGTGCAAAAGGCTCAAGAGTCTTCTCAGCAATGCCCCTTCTCTCAGAATTCTCGAGCTCTATGGCTGCTCAAGTCTCAAGGAATTTTCGGTGACATCGAAAGAAATGACATACTTGGACTTGAGAAGTACCGCGATTAATGAATTGCCATCATCCATTAAGAACCTTGGTAATCTCATGAGCTTGGAGCTAAGTTGCTGTGGTCGCCTTAGGAATCTTCCAAATGAGTTCTCATGCCTTAGATCTCTTGGCAGGCTGGTACTTTCTGATTGCACTCAACTTGACACATCTAATCTGAATTTTCTATTCGACGGCCTGCGTTCTTTGGGATACCTGTGTCTTGACAACTGTTGTAACCTAACTGAACTCCCTGACAACATAAGCTTGTTATCATCATTGTACTATCTATCACTGAGTGGAAGCAGTGTGGACAACATGCCTGCAAGCATCAAGCACCTTTCACAGCTAGAAACTCTTGACTTGTGCAAATGCATGAGGATTCAGTCTCTACCAGAACTCCCACCATCCATTGAAGTGTTGGATGTCACTAACTGCACCTCCTTGGAGACAGTGTTCACCTCTCCTGTCATTGATGAGCTGCTTCAAGAGCACAAGGTGTTCATTTCCTTCAAGAACTGTGTGAGATTGAGTGAACATTCCCTCAATGCTATTATGACAGATGCCCATGTAAGAATAAAGGAGGTAGCATATGTTCATGTATCAGCAATGATAGAAAGGAGTGACCCTTGTTACCTTTTCAAGTCAGAGCTGATGCCATCCTATCATCATCCACCAACTGTTATTTTCCCAGGTAGTAGAGTTCCGGACTGGTTTCACTATCGGTCGACTAAGGCATCGATAACAATCGAACTCTCCCATTCTCTACAATCCAACATATGTGGTTTCATTTTCTGCCTCATTCTACCTCCATCCTCATCAAATGAAAGTAATTGCAATTGGAAAATTGGATGTGAATGCTACTTGGAAGGTGGTGAAAGGATCAGAAACACAAGTATGTGCTCTTTTGCCACAGGGTTGGTTTCAGATCATGTGTACTTATGGTATGATGAAAGTTTTTGTCTTGACATGTTTGATACAATTGTTGAAAGTAGAACCAAGGATCAGTTCACAACTTATAACCCGAAGCTCTCATTTCAATTCTTTGTTGAAACTGAGGATAAGTTGAATGCGGTGATTAAGGAGTGTGGGATCTGCCAAATATATGGTTCAGAATATCTCAATTTTGTTGAACAGTTGGGATTTGAGTTGGAATTGGGAAATAAAACAAAGAGATGTAGGGATATTTATGAGATAGAGTCAAGTGAAACAGGAACTCAAGTTGAAGGCTGTTATGAGTATGAAGATGAACAAGCAGATGCATTTCATCAAAGAAAGAAACAGAAGGTGAGACATATCCACTTCGAAGGAAAATTAGGTGCTGATTATATGGCTAAAAATTTGAGTGAGGCACCAGTGAGAAAAAAGACCAATGTTGATTCGTGGTGCTATGGAGTTGACACTCCTTCCCGGTAA

Protein Sequence

>Glyur005218s00039187.1
TEWKMNQRRKEKPLPLHRVLAENPPPSSSSSHKYQHLQIVQTKKKHSIRVLMSFVERGSEREEDRAVLGESPPFKSVLRGGCEPQPNFKMVPTFQADFEGWIASSSAGSSLLRKNDVFISFRGEDTRSNFTSHLHAALCRSKIKTYIDYELVKGDQISEALAKAIEDSHVSVVVFSENYASSTWCLDELTHIMNCKKQEQNNQIVVPVFYNVDPSHVRKQSVGSSYGNAFEKHVRNPKHVMKVNQWREALAEVASLAGWDSRKYKPLGSDGGSWWDTSKDTLTLKLEIFHQSEGKAVVPHGTAYQDYVPCYSRMLLLYPRVVGFMWASQVWGGPSEAGSGFAPGIVGQAQVDPRFHTSGVNSFTGCERIWLKFVFHTSDVNCFPVVIASGLGTNFSRVVNGPALQVDTPPPITHPISMKWGEVRGVPWVLESDLVDDIVQDVLRKLQYKYPNESKGLIGIDKHCARIESFLRKGSTEVGMIGIWGMGGIGKTTIAAATFDNCSSQFEGCCFLENVGDDSDKHGLKHLRNKLVSVLLEEENLHMGSVRSGSSFCKSRLSHKKVLIVLDDLRTPQQLDYLVGEHSCFLGPGSRVILTTRDKHVLNRADEIYEVKPMNFHESLQLFSLNAFNKVHQDIGYEKLSESVVIYADGIPLALKVLGSLFCSKSKEVWLGTMTKLKKIPCKEIQNILRLSYDGLDDTEKEIFLDIACFFNGEDRQRVTRLLDACGFYASAGVETLLEKCLITISNNNEIQMHALIQEMGWEIVRQESTKDPGKRSRLYDREEVYDVLKNNTGTSAIEGMSMDVSQIRGMKLSSDIFAKMISLRFLRFYSRWGERCNVSLPAGLESLSNKLRYLHWSAYPLESLPSTFSPEKLVELSMPNSHVQRLWEGVQDLANLQKLDLSCSEHLIQLPDFSMAPNLQSINLYGCARLRQVHPSILSLKKLVNLNLVWCKRLKSLLSNAPSLRILELYGCSSLKEFSVTSKEMTYLDLRSTAINELPSSIKNLGNLMSLELSCCGRLRNLPNEFSCLRSLGRLVLSDCTQLDTSNLNFLFDGLRSLGYLCLDNCCNLTELPDNISLLSSLYYLSLSGSSVDNMPASIKHLSQLETLDLCKCMRIQSLPELPPSIEVLDVTNCTSLETVFTSPVIDELLQEHKVFISFKNCVRLSEHSLNAIMTDAHVRIKEVAYVHVSAMIERSDPCYLFKSELMPSYHHPPTVIFPGSRVPDWFHYRSTKASITIELSHSLQSNICGFIFCLILPPSSSNESNCNWKIGCECYLEGGERIRNTSMCSFATGLVSDHVYLWYDESFCLDMFDTIVESRTKDQFTTYNPKLSFQFFVETEDKLNAVIKECGICQIYGSEYLNFVEQLGFELELGNKTKRCRDIYEIESSETGTQVEGCYEYEDEQADAFHQRKKQKVRHIHFEGKLGADYMAKNLSEAPVRKKTNVDSWCYGVDTPSR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05218	2009	10004	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007165 signal transduction

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005218s00039187.1	PF01582.15	TIR	117	251	3.80E-36
Glyur005218s00039187.1	PF00931.17	NB-ARC	461	730	5.40E-40
Glyur005218s00039187.1	PF07725.7	LRR_3	873	892	7.80E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.056
SRR1783600	control	2.016
SRR1783602	moderate drought stress	3.160
SRR1811619	moderate drought stress	3.128

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.607
DRR006520	Root Summer glycyrrhizin high producing strain	1.608
DRR006521	Root Winter glycyrrhizin high producing strain	1.366
DRR006522	Root Winter glycyrrhizin high producing strain	1.317
DRR006523	Root Summer glycyrrhizin low producing strain	1.790
DRR006524	Root Summer glycyrrhizin low producing strain	1.820
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.886
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.904

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.432
SRR2868004	Drought Stress (root)	2.936
SRR2967015	Control (root)	4.160

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.149
SRR9715740	Leaf	1.228
SRR9715741	Leaf	0.886
SRR9715739	Root	0.183
SRR9715742	Root	1.346
SRR9715743	Root	1.045

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.789
SRR8749028	MeJA induced 9h	0.548
SRR8749029	MeJA induced 9h	0.462
SRR8749030	Uninduced	0.363
SRR8749031	Uninduced	0.252
SRR8749032	Uninduced	0.358

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.095
SRR8400027	Control - Root	2.940