Gene detail information of Glyur005200s00042767 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G33780.1 | 9.00E-68 | Protein of unknown function (DUF179) |
| NR | AFK39003.1 | 2.53E-116 | unknown [Lotus japonicus] |
| COG | YP_001995105.1 | 4.00E-12 | hypothetical protein Ctha_0187 [Chloroherpeton thalassium ATCC 35110] |
| trEMBL | tr|I3SFG1|I3SFG1_LOTJA | 9.00E-117 | Uncharacterized protein {ECO:0000313|EMBL:AFK39003.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05200 | 9651 | 10326 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005200s00042767.1 | PF02622.10 | DUF179 | 49 | 137 | 2.70E-12 |
| Glyur005200s00042767.1 | PF02622.10 | DUF179 | 140 | 175 | 9.50E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.032 |
| SRR1783600 | control | 5.878 |
| SRR1783602 | moderate drought stress | 8.100 |
| SRR1811619 | moderate drought stress | 8.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.232 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.076 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.090 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.614 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.797 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.390 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.549 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.732 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.863 |
| SRR2868004 | Drought Stress (root) | 1.230 |
| SRR2967015 | Control (root) | 2.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.796 |
| SRR9715740 | Leaf | 1.691 |
| SRR9715741 | Leaf | 5.114 |
| SRR9715739 | Root | 1.346 |
| SRR9715742 | Root | 4.267 |
| SRR9715743 | Root | 2.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.648 |
| SRR8749028 | MeJA induced 9h | 1.066 |
| SRR8749029 | MeJA induced 9h | 1.276 |
| SRR8749030 | Uninduced | 0.869 |
| SRR8749031 | Uninduced | 1.626 |
| SRR8749032 | Uninduced | 2.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.192 |
| SRR8400027 | Control - Root | 3.451 |