Gene detail

Gene detail information of Glyur005200s00042765

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G28530.1	2.00E-05	FAR1-related sequence 10
NR	XP_003590599.1	2.53E-24	FAR1-related protein [Medicago truncatula]
Swissprot	tr\|Q9LKR4\|FRS10_ARATH	1.00E-05	Putative protein FAR1-RELATED SEQUENCE 10
trEMBL	tr\|G7IUN8\|G7IUN8_MEDTR	2.00E-24	FAR1 DNA-binding domain protein {ECO:0000313\|EMBL:AES67962.1}

Sequence

Transcript Sequence

>Glyur005200s00042765.1
CTCTAAAACACCATTTTCTCTAACTTCTCTCTAACTCCATCTTCTTCCTCCAAGCTTTTTTTCCATTTCCATGGAAGCTTTCCATCTTCTTCCTTCATATTTTTGATCCTTTACACAAGCATCAAGTGTGGAGAATCCATTTTTAACCACTTTAAACACAAAGCCTTCATCACTTTTAATCATCAAGTGTTCTTATTTTTCAAGAACATCAAGCTAAGGATTTTTGGACTTTGGGAGTTTGAGTTCTTGGACTTGGGGATTACAAAATTTTAGAAGGAGAAAGATTTGAGTTTACGAAGAGAGGGAATCAGTTTTTCAGAGGGAAACACATTGTAAGCATGGAAAACCAGCTACGCGAGGCTCCATCAACCAGTAATGCGATTGAGGAATAGGGAGACGGCTAACGGGGAAGCAGCGACGATGGAGGTAGACCCATTTGAAGGACAACGCAGCGTGGTGCATACTCGATTTACCGGTAACGGCGGAAAATTTGACTGGCGAGGGGCGAAGGGGTTTGCGAACAAAGGGACTGCAGTTTCTGAACTTCAAGTTTGTTGGGGTAGTATTTTGTTGATATGTAATTGGTTTAGTTTTGGAATGGATCAAGCAGAGGAAGTGACGGCTACCATAGTAGAATCAGCAGCACGGGGGCTGGATGAGATATCTTTGTGGAATGAGCATGAATGTTCATATCAAAATGAAGGTTCTGGTTGTGAGACAGATGAGGAAGATGCTGGAGGCGAAGGAAATGGTCAATGTAGATTTAAGTTGAACGGTGATTATGCACTGAATTGTGTTGAAGACTTTGGGAAAATCAACATGTCTGACTTAAGTAATCAAAATATAATGAGGTTCCATTTTGCAGATATTGGTGTTGCCTTTAAGTTTTATAGTTGGTATGGTAGTCTGCATGGTTTTGGTGCTAGGAAAAGCAAGATATTGTGGAATTGTAAAGGTGAAGCAATCCAGCAGACATTTCTATGTAATAGAGAAGGATATAGAGAACCAAAACATATGATTAGAGTTGAGAAGAAGCGTGAACCTAAACAAAACACTAGATGTGGTTGTACAGCAAAATGTCACGTTCACGTTGAAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05200	1805	7960	-

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005200s00042765.1	PF03101.10	FAR1	170	239	2.60E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.909
SRR1783600	control	3.703
SRR1783602	moderate drought stress	3.458
SRR1811619	moderate drought stress	3.444

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.547
DRR006520	Root Summer glycyrrhizin high producing strain	4.261
DRR006521	Root Winter glycyrrhizin high producing strain	1.223
DRR006522	Root Winter glycyrrhizin high producing strain	1.278
DRR006523	Root Summer glycyrrhizin low producing strain	0.315
DRR006524	Root Summer glycyrrhizin low producing strain	0.243
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.306
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.891

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.105
SRR2868004	Drought Stress (root)	8.531
SRR2967015	Control (root)	8.489

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.464
SRR9715740	Leaf	5.222
SRR9715741	Leaf	11.918
SRR9715739	Root	0.045
SRR9715742	Root	0.930
SRR9715743	Root	0.799

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.596
SRR8749028	MeJA induced 9h	0.321
SRR8749029	MeJA induced 9h	0.291
SRR8749030	Uninduced	0.245
SRR8749031	Uninduced	0.603
SRR8749032	Uninduced	0.134

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.165
SRR8400027	Control - Root	4.064