Gene detail

Gene detail information of Glyur005193s00043787

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04320.2	1.00E-15	Shugoshin C terminus
NR	XP_004506067.1	7.12E-143	PREDICTED: shugoshin-1-like [Cicer arietinum]
Swissprot	tr\|Q4QSC8\|SGO1_MAIZE	9.00E-15	Shugoshin-1
trEMBL	tr\|K7LQA6\|K7LQA6_SOYBN	6.00E-133	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G19895.1}

Sequence

Transcript Sequence

>Glyur005193s00043787.1
CTTTCCTTTCCTTTCCTTCCTCCACACTCATTCCTCTCGTATTATCCGATGATCTTAAATCTTAAATAGTACACACTGAAAGCAACTGTCGCTGGTGTTTGTTCACTCTCTAGCGTCGGGTAATTGAAATGAACAGGCAAAGTTGTTGAGTTAAACACAGGCACAGAGGGGCAGTATCGCGCGGCATGCGGGCGGTGGGAGAAGATGGCACCGCCGAAGAGATCCATCGGAAGCTTAATGCGGAAGAAGCTTTCTGATATCACCAACTCTCACTCTCTCCCTCAACACCACCATAACCTCCCTCTCCCTCTCCACACTCCCCCCTCCGATCCCGATCCCGACCACCATTCCATTCAACAACTCCTCAAGGAAAGAGCCACTTTGATCCAACTCCTTGCGGAGAGAAATAAAATGCTTGAAATGAATGGAGCTGAGCTGCAGAGGCTGCGAGCCGATATTAAGAAGATGCAACTGCAAAACTGGAATCTTGCTCAGTCCAATACCCACATGTTAGCGGAGCTTAACTTGGGGAGGGAAAAAATAAAAACACTGCAGCATGAAATTTTGTGGAGGGCTGCTCTGATTAAAGGAAAGACCTTGGACTTACAGGAAAAAGTGGAGATTGACTCTGAAAAGAATGCGTCATTGTCACAGTCACAGGGAGGAGATGAAAAAGCAGGGCAACCATCCCCTAAAGCTAGCAATGATGAACANCACAGCTCTATGAACAGAAGACGCATAAGGAGTAGATCCACTGGTTCTTCTACTGCTTCCACAAAGAATACAAGCAAAGACCAGGTTAAAGACAACAGACGTTTGAGGAGACACTCTGCTACGTTCAAAACCCATGAACACGAGCCTCTAGAAAATTTGTTCGAGATAGAGGATGCTCTCACTCAATCTAGACCTAACATGCTGAGTTCTCCAGCTGTAAAAGCTGAAACAGGAGAAAGCTCTGTTCTAAGAAACGAAGCTCCAAGGTTTTCTTTTGGAAGACCCTTGAGAAGAGCAACTGAGAAGGTTCAATCTTACAAGGAGGTTCCTCTAAATGTCAAGCTGCGAAGACTAGAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05193	2708	4792	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0045132 meiotic chromosome segregation

cellular_component

GO:0000775 chromosome, centromeric region

GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005193s00043787.1	PF07557.6	Shugoshin_C	263	287	6.20E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.736
SRR1783600	control	2.879
SRR1783602	moderate drought stress	1.652
SRR1811619	moderate drought stress	1.525

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.688
DRR006520	Root Summer glycyrrhizin high producing strain	3.898
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	1.036
DRR006524	Root Summer glycyrrhizin low producing strain	1.200
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.279
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.234

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.899
SRR2868004	Drought Stress (root)	7.752
SRR2967015	Control (root)	9.338

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.175
SRR9715740	Leaf	0.055
SRR9715741	Leaf	0.665
SRR9715739	Root	0.825
SRR9715742	Root	1.570
SRR9715743	Root	1.119

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.342
SRR8749028	MeJA induced 9h	0.603
SRR8749029	MeJA induced 9h	0.726
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.458

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.872
SRR8400027	Control - Root	9.903