Gene detail information of Glyur005173s00045091 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G30820.3 | 1.00E-21 | cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related |
| NR | NP_001238600.1 | 2.38E-75 | uncharacterized protein LOC100305654 [Glycine max] |
| trEMBL | tr|C6SW25|C6SW25_SOYBN | 9.00E-76 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G04910.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05173 | 776 | 1978 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005173s00045091.1 | PF06391.8 | MAT1 | 1 | 64 | 3.50E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.754 |
| SRR1783600 | control | 0.991 |
| SRR1783602 | moderate drought stress | 1.762 |
| SRR1811619 | moderate drought stress | 1.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.705 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.479 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.500 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.485 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.088 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.484 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.670 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.621 |
| SRR2868004 | Drought Stress (root) | 1.315 |
| SRR2967015 | Control (root) | 0.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.764 |
| SRR9715740 | Leaf | 0.071 |
| SRR9715741 | Leaf | 0.953 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.027 |
| SRR8749028 | MeJA induced 9h | 1.954 |
| SRR8749029 | MeJA induced 9h | 0.915 |
| SRR8749030 | Uninduced | 20.415 |
| SRR8749031 | Uninduced | 9.774 |
| SRR8749032 | Uninduced | 4.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.469 |
| SRR8400027 | Control - Root | 0.844 |