Gene detail

Gene detail information of Glyur005142s00040374.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64050.1	0	glutamate tRNA synthetase
NR	XP_004510174.1	0	PREDICTED: glutamate--tRNA ligase, chloroplastic/mitochondrial-like [Cicer arietinum]
COG	YP_004112198.1	5.00E-145	glutamyl-tRNA synthetase [Desulfurispirillum indicum S5]
Swissprot	tr\|Q9FEA2\|SYE_ARATH	0	Glutamate--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|A0A072TKH0\|A0A072TKH0_MEDTR	0	Glutamyl-tRNA synthetase {ECO:0000313\|EMBL:KEH18014.1}

Sequence

Transcript Sequence

>Glyur005142s00040374.1
CTGCCTTAGTAGAGTGAAGAGTCCAAGCTACAGAGTACAGAGAGAGAAGGGATGGCAGTGTTGTTGGGTTTGGGAGTTGGGAGTCCATGGGCGAAGGTTGTTGTTGCTCCTCATTTTCTTCTCCATCAATCTTACGCTTCACGAAGATCCTTCTTCTTCAAACGCAAATTCTCAGTCTCTGCTCTCTCTTCACAACAACAACCCTTTCCAGTTCGTGTTCGTTTCGCTCCTTCTCCAACTGGTAACCTTCACGTTGGTGGTGCCAGAACTGCCCTCTTCAACTACTTGTTTGCCAGGTCCAAAGGTGGGAAATTTGTGTTGAGAATTGAGGACACTGACTTGGAGAGGTCTACCAGGGAATCTGAGGAGGCTGTGCTTCGAGATCTTTCCTGGCTTGGACTTGATTGGGATGAAGGGCCTGGTGTTGGTGGGGATTATGGCCCATACAGGCAATCTGAGAGGAATTCTCTGTACAAACAATATGCTGAGAAACTCCTCGAATCTGGTCAAGTTTATCGCTGCTTCTGTTCTAATGAGGAACTAGAGAAAATGAAGGAGGTTGCTAAACAAATGCAGCTGCCTCCAGTATACACAGGTAAATGGGCCAATGCAACAAATGAGGAAGTAGAAGAAGAGTTGGCAAAAGGAACTCCTTATACATTCCGGTTTCGTGTCCCCAAAGGAGGTTTAAAAATCAATGACCTAATACGAGGCGAAGTTAGTTGGAACTTGGATACACTTGGAGATTTTGTGATAATGAGGAGTAATGGACAGCCAGTTTATAACTTTTGTGTGACGGTTGATGATGCTACCATGGCTATTTCCCATGTTATCAGAGCAGAGGAGCATTTACCAAACACTCTAAGGCAGGCATTAATATATAAGGCACTAGAATTTCCCATGCCTCACTTTGCACATGTTTCCTTGATTTTAGCTCCTGATCGGAGTAAATTATCAAAACGACATGGAGCAACATCAGTGGGTCAGTTCAGGGAAATGGGATATCTACCTGAAGCAATGGTGAATTACCTAGCATTATTAGGTTGGGGTGATGGGACCGAAAATGAGTTTTTCACCCTCGATAAACTTGTTGAAAAATTCACTATTGAACGTGTTAACAAAAGTGGTGCTGTTTTTGATAACACAAAATTAAGGTGGATGAATGGTCAGCATTTAAGAGCACGTCCATCAGAGGAGTTGACCAATCTTATTGGAGAGCGCTGGAAGACATCTGGCTTGCTCACAGTATCAGCAGGGCCCTTTGTTGATGAATCAATTCAACTGCTTAAGGATGGGATTGACTTGATAACTGATGCAGACAAGGCACTTGCTAACTTGCTTTCTTATCCTCTACATTCTACTTTACAGAGCAATGAAGCAGAATCTGTCATACAAGATAATCTTTCTGAATTTTCTGCCAGCCTCTTGGCTGCCTATGATAGTGCTGGGACCAGTGGTTTCATAGCTCCTGAAGTTGGCTTTGTAACAGTGGATGAAAGATTTAAAANGATTAGGGAAATTAATTGGGAAACATTGTCCAAGGATCATCCTGTGAAGGAAACTGCTCCTTCTGTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05142	598	5426	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01885	EARS, gltX	EC:6.1.1.17	Porphyrin and chlorophyll metabolism	map00860
			Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process

GO:0006418 tRNA aminoacylation for protein translation

GO:0006424 glutamyl-tRNA aminoacylation

GO:0043039 tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000049 tRNA binding

GO:0000166 nucleotide binding

GO:0004812 aminoacyl-tRNA ligase activity

GO:0004818 glutamate-tRNA ligase activity

GO:0005524 ATP binding

GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005142s00040374.1	PF00749.16	tRNA-synt_1c	54	369	4.30E-107

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.980
SRR1783600	control	11.828
SRR1783602	moderate drought stress	10.053
SRR1811619	moderate drought stress	9.809

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.603
DRR006520	Root Summer glycyrrhizin high producing strain	13.824
DRR006521	Root Winter glycyrrhizin high producing strain	16.953
DRR006522	Root Winter glycyrrhizin high producing strain	15.673
DRR006523	Root Summer glycyrrhizin low producing strain	11.906
DRR006524	Root Summer glycyrrhizin low producing strain	12.773
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.815
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.483

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.223
SRR2868004	Drought Stress (root)	11.196
SRR2967015	Control (root)	12.332

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.353
SRR9715740	Leaf	22.169
SRR9715741	Leaf	18.168
SRR9715739	Root	6.140
SRR9715742	Root	13.706
SRR9715743	Root	10.280

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.817
SRR8749028	MeJA induced 9h	5.390
SRR8749029	MeJA induced 9h	3.861
SRR8749030	Uninduced	2.782
SRR8749031	Uninduced	0.886
SRR8749032	Uninduced	1.270

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.419
SRR8400027	Control - Root	26.265