Gene detail information of Glyur005135s00045962 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_004489641.1 | 1.70E-97 | PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 1B-like isoform X2 [Cicer arietinum] |
| trEMBL | tr|G7KPK5|G7KPK5_MEDTR | 4.00E-97 | RNA polymerase II-binding domain protein {ECO:0000313|EMBL:AES75162.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05135 | 7376 | 8218 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 40.279 |
| SRR1783600 | control | 40.982 |
| SRR1783602 | moderate drought stress | 59.092 |
| SRR1811619 | moderate drought stress | 58.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.932 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.956 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 46.702 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 51.850 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.206 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.606 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.513 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.132 |
| SRR2868004 | Drought Stress (root) | 13.538 |
| SRR2967015 | Control (root) | 15.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.943 |
| SRR9715740 | Leaf | 22.142 |
| SRR9715741 | Leaf | 19.303 |
| SRR9715739 | Root | 4.369 |
| SRR9715742 | Root | 14.182 |
| SRR9715743 | Root | 10.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.618 |
| SRR8749028 | MeJA induced 9h | 15.227 |
| SRR8749029 | MeJA induced 9h | 12.799 |
| SRR8749030 | Uninduced | 15.204 |
| SRR8749031 | Uninduced | 11.572 |
| SRR8749032 | Uninduced | 7.851 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.056 |
| SRR8400027 | Control - Root | 8.313 |