Gene detail information of Glyur005129s00047877 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47140.1 | 2.00E-80 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | KEH39093.1 | 2.55E-131 | short-chain dehydrogenase/reductase [Medicago truncatula] |
| COG | YP_007565317.1 | 7.00E-42 | putative oxidoreductase [Ilumatobacter coccineus YM16-304] |
| Swissprot | tr|Q94K41|SDR3B_ARATH | 5.00E-100 | Short-chain dehydrogenase reductase 3b |
| trEMBL | tr|A0A072VCB0|A0A072VCB0_MEDTR | 9.00E-132 | Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:KEH39093.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05129 | 2034 | 2732 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005129s00047877.1 | PF13561.1 | adh_short_C2 | 16 | 221 | 9.50E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.130 |
| SRR1783600 | control | 0.105 |
| SRR1783602 | moderate drought stress | 0.610 |
| SRR1811619 | moderate drought stress | 0.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.506 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.975 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 68.413 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 67.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.122 |
| SRR2868004 | Drought Stress (root) | 1.274 |
| SRR2967015 | Control (root) | 0.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.305 |
| SRR9715740 | Leaf | 3.556 |
| SRR9715741 | Leaf | 3.367 |
| SRR9715739 | Root | 0.071 |
| SRR9715742 | Root | 0.332 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.016 |
| SRR8749029 | MeJA induced 9h | 0.021 |
| SRR8749030 | Uninduced | 0.001 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.138 |
| SRR8400027 | Control - Root | 0.220 |