Gene detail information of Glyur005122s00047232 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G07040.1 | 1.00E-103 | NB-ARC domain-containing disease resistance protein |
| NR | KEH33986.1 | 0 | LRR and NB-ARC domain disease resistance protein [Medicago truncatula] |
| COG | YP_004165614.1 | 2.00E-11 | adenylate cyclase [Cellulophaga algicola DSM 14237] |
| Swissprot | tr|Q39214|RPM1_ARATH | 4.00E-115 | Disease resistance protein RPM1 |
| trEMBL | tr|A0A072UX30|A0A072UX30_MEDTR | 0 | LRR and NB-ARC domain disease resistance protein {ECO:0000313|EMBL:KEH33986.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05122 | 4278 | 7216 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005122s00047232.1 | PF00931.17 | NB-ARC | 183 | 473 | 9.80E-79 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.556 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.579 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.309 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.300 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.307 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.231 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.028 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.357 |
| SRR2868004 | Drought Stress (root) | 17.147 |
| SRR2967015 | Control (root) | 15.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.194 |
| SRR8749028 | MeJA induced 9h | 0.451 |
| SRR8749029 | MeJA induced 9h | 0.143 |
| SRR8749030 | Uninduced | 0.575 |
| SRR8749031 | Uninduced | 0.120 |
| SRR8749032 | Uninduced | 0.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.000 |