Gene detail information of Glyur005120s00046156 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G10540.1 | 2.00E-07 | Zincin-like metalloproteases family protein |
| NR | XP_010456469.1 | 5.49E-08 | PREDICTED: probable cytosolic oligopeptidase A [Camelina sativa] |
| Swissprot | tr|Q949P2|COPDA_ARATH | 3.00E-08 | Probable cytosolic oligopeptidase A |
| trEMBL | tr|A0A058ZRU1|A0A058ZRU1_EUCGR | 9.00E-08 | Uncharacterized protein {ECO:0000313|EMBL:KCW44076.1} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05120 | 3129 | 3915 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.019 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 5.679 |
| SRR1811619 | moderate drought stress | 5.599 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.886 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.924 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.526 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.471 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.300 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.012 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.866 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.026 |
| SRR2868004 | Drought Stress (root) | 0.031 |
| SRR2967015 | Control (root) | 0.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.470 |
| SRR9715740 | Leaf | 5.007 |
| SRR9715741 | Leaf | 0.179 |
| SRR9715739 | Root | 9.769 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.481 |
| SRR8400027 | Control - Root | 8.559 |