Gene detail information of Glyur005117s00042181 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G47590.1 | 1.00E-27 | alpha/beta-Hydrolases superfamily protein |
| NR | XP_003595193.1 | 7.45E-44 | hypothetical protein MTR_2g039510 [Medicago truncatula] |
| COG | YP_004334145.1 | 9.00E-07 | alpha/beta hydrolase fold protein [Pseudonocardia dioxanivorans CB1190] |
| trEMBL | tr|A2Q1D5|A2Q1D5_MEDTR | 3.00E-44 | Uncharacterized protein {ECO:0000313|EMBL:AFK47758.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05117 | 19 | 3413 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005117s00042181.1 | PF12695.2 | Abhydrolase_5 | 16 | 58 | 5.00E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.417 |
| SRR1783600 | control | 0.261 |
| SRR1783602 | moderate drought stress | 0.622 |
| SRR1811619 | moderate drought stress | 0.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.587 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.554 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.106 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.610 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.467 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.220 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.089 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.312 |
| SRR2868004 | Drought Stress (root) | 4.258 |
| SRR2967015 | Control (root) | 3.645 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.410 |
| SRR9715740 | Leaf | 0.658 |
| SRR9715741 | Leaf | 2.390 |
| SRR9715739 | Root | 0.377 |
| SRR9715742 | Root | 0.737 |
| SRR9715743 | Root | 0.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.106 |
| SRR8749028 | MeJA induced 9h | 9.615 |
| SRR8749029 | MeJA induced 9h | 10.672 |
| SRR8749030 | Uninduced | 4.948 |
| SRR8749031 | Uninduced | 4.055 |
| SRR8749032 | Uninduced | 3.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.764 |
| SRR8400027 | Control - Root | 3.002 |