Gene detail

Gene detail information of Glyur005112s00044618

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25360.2	2.00E-156	TRICHOME BIREFRINGENCE-LIKE 18
NR	XP_004514981.1	0	PREDICTED: uncharacterized protein LOC101511114 isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8VYS5\|TBL18_ARATH	0	Protein trichome birefringence-like 18
trEMBL	tr\|G7KNS1\|G7KNS1_MEDTR	0	Trichome birefringence-like protein {ECO:0000313\|EMBL:AES75905.1}

Sequence

Transcript Sequence

>Glyur005112s00044618.1
ATGAAAGGCATAACTTGGGGGGTTTCCACCCCAAAAAGTTCTTCCCATTCAAGACCTATTTCTTGGATTGTAGTTTCAGTGGGAGTACTTGCAGTATTCTTCTTGACTTTTGCTTCATGGGCTATTGTATCATATTCATACCCTATTGGTTCCACTGTTCATGGATATTTCAATGGTGTAGAGATAGAGAGTTCACAAAATTCTGATTTATCAGTCTCTTCAATTAATGGAACTTCTGCTGATCCTCAAGTGAATGCAAGTTTAGATCTAGTAGATAATAAAGCACCCCTTGATCTGAAACCTTCCATAGTTTCCAATGAAGTGTCAAGTGATAGCAAGATAGAACACACTGATATTGAATCAAATTCAAAAGTATCCTTTGGTGAATCTGCTTCACCAAAACTTCCAGTAACAATCAAGGAGGTGAATGGCCTAGAAACTTCTGAAGCCGCCGCGGCTTCTAGTTCACAAGGACCGGCGGTGACTTCATTAGAAAAAGGTAGAGAGGTGGTTAACAGTAGCTTGCCTGGTCACTCCAATTCACAAATTGATTTGGCTTCAACTTCACCTATTCCAGTGGCTGGTACCAATTCTTCCATTGTGAAGGGCTGTGATCTGTACCATGGAAATTGGATATATGACCCATCCGGACCATTATACACAAACAACTCGTGCCCTGTATTGACACAAACGCAGAATTGCCAGGGTAATGGGAGGCCTGATAAGGATTACGAGAACTGGCGATGGAAGCCTTTTCAGTGTGACATCCTGCGATTTGATCCCAGGAAGTTTTTGGAGCTAATGAGAGGCAAGACATTGGCTTTCATAGGGGATTCAGTGGCTCGAAACCAGATGGAGTCAATGCTGTGTATTCTCTGGCAGGTAGAGGAACCCAAGAATCAGGGAAACCGCAACATGCAGCGATACTATTTTGAGTCTGCGTCTGTACTGATTGTCCGGATATGGTCCTCNTGGCTTGTCAAACACAATTCCGAACCATTTGATTTTGCTCCAGCTGGTGTGGAGAAGCTCTATCTCGAANCCCCNGANGAGAAGTTGATGGAATTNATNCCAACNTTCGACGTGGTTGTTNTTTCNTCNGGCCATTGGTTTGCTAAGCAGTCTGTATACATCTTGAACAACGAGATAGTGGGAGGACAATTGTGGTGGTCAGACAAGTCTCGGCATATGAAGGTCAATGGTGTCGAAGCATTCGGTATATCTGTTGAAACGATTTTCACCGCTCTTGTTACGCATCCGAATTATACCGGCCTCACAATTTTGCGATCCTATTCGCCTGATCATTATGAGGGTGGGGGCTGGAACACAGGTGGATCATGCACTGGGAAAGTTAAGCCTCTTGCATCACCTGGTGAATTGGTGGAAAATAGGCATCTCAATGCAATGCATGAGCAACAAGTTGCAGGCTTTAACCGTGCGACGAAAAAGGCAACAAATAGAGCAAAGATGAGATTAATGGATATTACCGAAGCCTTTCAGTACCGGCATGATGGTCACCCTGGACCATATAGGAGCACTGATCCTAACAAGATTACGAAACGCGGCCCAGGTGGAAGGCCTCCGCCACAGGATTGCTTGCACTGGTGCATGCCAGGTCCAGTAGATATCTGGAATGAAATTGTGTTTGAAATCATTAAGAGAGAATATGAAAGTGACAGCACATCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05112	3277	6083	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005112s00044618.1	PF14416.1	PMR5N	202	255	8.20E-23
Glyur005112s00044618.1	PF13839.1	PC-Esterase	258	552	5.10E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.975
SRR1783600	control	1.983
SRR1783602	moderate drought stress	2.236
SRR1811619	moderate drought stress	2.087

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.144
DRR006520	Root Summer glycyrrhizin high producing strain	3.811
DRR006521	Root Winter glycyrrhizin high producing strain	1.662
DRR006522	Root Winter glycyrrhizin high producing strain	1.418
DRR006523	Root Summer glycyrrhizin low producing strain	2.489
DRR006524	Root Summer glycyrrhizin low producing strain	2.290
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.477
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.546

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.313
SRR2868004	Drought Stress (root)	7.060
SRR2967015	Control (root)	8.331

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.193
SRR9715740	Leaf	2.755
SRR9715741	Leaf	3.073
SRR9715739	Root	1.262
SRR9715742	Root	3.699
SRR9715743	Root	3.161

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.081
SRR8749028	MeJA induced 9h	1.093
SRR8749029	MeJA induced 9h	1.018
SRR8749030	Uninduced	0.695
SRR8749031	Uninduced	0.301
SRR8749032	Uninduced	0.154

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.924
SRR8400027	Control - Root	4.100