Gene detail

Gene detail information of Glyur005093s00044260

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14790.1	6.00E-89	RNA-dependent RNA polymerase 1
NR	KEH40644.1	5.34E-134	RNA-directed RNA polymerase [Medicago truncatula]
Swissprot	tr\|Q0DXS3\|RDR1_ORYSJ	6.00E-99	Probable RNA-dependent RNA polymerase 1
trEMBL	tr\|A0A072VF31\|A0A072VF31_MEDTR	2.00E-134	RNA-directed RNA polymerase {ECO:0000313\|EMBL:KEH40644.1}

Sequence

Transcript Sequence

>Glyur005093s00044260.1
AAGGAACTTAGTTAAAGATTTGAGTGTACAGAATAATTGTCCATATATATAGATATAGATTCCATTTTGTTTCTAAAACTTTTGCTAACCTGCTAATAAATGTTGCACTTATTTTTTCCTGTTTAGAAATATCAGCATTTTCAAAAGACATCAAGGATAACTGTTGATGTTGTGACACCTAACTTAGGAAAGCCAAGAGTTACCATTTAGGATGGGTAAAACAATTAAGGTGTATGGATTCCCTTCTCATGTGATTGAGTCTCTTGTAAAGAGATTTATAGAGCATTATACTGGTGAAGAAACTGTGTTTGCTATTAAGATAAGACAAGGCAAAAGAGCATTTGCATTTATTCAATTCACTTCTGCAAAACATGCTACAGATATGATGTCCTTCCCTGACAGAAGTTTGTGGTATGGTAACTCCTATCTAAAAGTTCAGGAAGCGGAAAGAGATGTTGTTCCAAGGCCAAGGACTTTCTTGAACAGTTTGAATAATGTGAAACTGTATTTTGGCTGTCAAATCTCGAAGGGAAGAATCTCTGTTTTATGGAAAAAGGTGAATGATGTTACTGTAGAGTTTGGGATTGGAATGAGAAAGTGGCGTTTCTTTCTGTTCCATGGTGACAATAAGTACAAACTTGAGCTTTCATATGAGAACATTTGTAAGATTGAGCTGTATCAACCACAGGGTGAAACTACAAAGTATCTCCTGATTCAGTTACTAGGTGCTCCTCGGATTTTTAAGATGGTTATTCCCACTTCAGCAAATATATATGAAGATCCTTTGTTGAACTATTTTAAAGATACACCTGATGAGCAATGGATTCGAGCAATAGATTTCTCTCCTTGCAGTTGTATTGGGCAGTCTTCTGCTTTATGTGTGGAGCTTCCCGATGACCAAGATTTTCCAAATTTCAGGGAAAACTTTGCTTATTATGAGGAAAGTGAGAAGCAGTACGCTTTGGAGAGTGGATATCCTTTTTCTCACAATCCGGATCTTGTCCCCATTGTTGCTCCTCCTCAACACATTGAAATTCCATTTGACATCTTGTTTAAAGTTAATTCTTTGGTTCAGCACGGTCTGGGTATAATTGCCCATCGACACATTGTCTTTGCAGATAAAGAATCTGAAAAGGCAATGTCTGAGCCATGTGTTGAGCTTGCAAAGCTACACTCAATAGCGGTCGACTTTCCGAAGACCGGTGCCCCTGCTGTCATACCTCCTAATCTTTATGTCAAAGGATATCCAGACTTCATGGAGAAGCCTGACAAACCCACCTATCAGTCATCTAACGTGATAGGAAAGCTTTTCAGGGAAGTGCAAGGAATTTCAACAAGTGCTGGCTCTATTACATCCTTCACACAGGAAGTGGCTACACAGTCATATGACTCTGACATGGAAGTTGACGGCTTTATGGATTATGTTGATGATGCTTTCCATCACAAGAGCAACTATGACTACAAGTTGGGGAATCTGATGGACTACTATGGGATCAAAACCGAAGCCGAAATCCTTGGTGGGAATATTACGAAAATGTCAAAATCTTTCACCAAAAAAAGGGACGCGGATGCAATTAATATGGCCGTGAAGTCCCTGAGGAAAGAGGCGAGGACTTGGTTCAATGGTAGCAGTAGCGGTGTAGATTCCAGGAGCGATGATGCATATGCAAAAGCTTCTGCTTGGTACTATGTTACTTACCATCCAAGTTACTGGGGTTGCTACAATGAAGGAATGGGTAGGGACCATTATATAAGCTTCCCATGGTGTGTTTACCCTCAACTTGTCCAAATCAAGAAGGAGAAAGCCAGGATGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05093	743	10185	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003968 RNA-directed RNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005093s00044260.1	PF05183.7	RdRP	283	373	3.80E-22
Glyur005093s00044260.2	PF05183.7	RdRP	283	373	3.80E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.377
SRR1783600	control	3.276
SRR1783602	moderate drought stress	0.379
SRR1811619	moderate drought stress	0.295

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.013
DRR006520	Root Summer glycyrrhizin high producing strain	19.365
DRR006521	Root Winter glycyrrhizin high producing strain	1.662
DRR006522	Root Winter glycyrrhizin high producing strain	1.569
DRR006523	Root Summer glycyrrhizin low producing strain	40.803
DRR006524	Root Summer glycyrrhizin low producing strain	41.052
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.251
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.174

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.973
SRR2868004	Drought Stress (root)	5.038
SRR2967015	Control (root)	5.820

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.154
SRR9715740	Leaf	0.134
SRR9715741	Leaf	0.152
SRR9715739	Root	0.228
SRR9715742	Root	0.418
SRR9715743	Root	0.380

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.161
SRR8749028	MeJA induced 9h	1.007
SRR8749029	MeJA induced 9h	1.674
SRR8749030	Uninduced	0.406
SRR8749031	Uninduced	0.071
SRR8749032	Uninduced	0.595

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.799
SRR8400027	Control - Root	2.707