Gene detail

Gene detail information of Glyur005041s00044474

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53600.1	7.00E-123	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_004488659.1	0	PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial-like [Cicer arietinum]
Swissprot	tr\|Q9C8L6\|PPR80_ARATH	1.00E-153	Pentatricopeptide repeat-containing protein At1g53600, mitochondrial (Precursor)
trEMBL	tr\|K7M206\|K7M206_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G33512.2}

Sequence

Transcript Sequence

>Glyur005041s00044474.1
ATGACTATAATGTTGAAAGGATGTGGGAGTTGTGGTGGGGTGAGAGAGGGAATGCAGGTGCATGGGTTGGTTTCAAGGATGGGGTTTGAGTTTGACAGTGTTTTGAGTAACTCTGTTATTACCATGTATTCCGTGTTTGGTTGCACTGACATGGCGGAGAAAGTGTTTTCTGCCATGAGTAATAGAGATGTGGTTACCTGGAATTCTTTGATTTCTGGATACGTTTATAACAATGAAGTGGATGTGGCTTATGGGGTTTTTGAGAGGATGCTGGAGAAGGACTTGATTTCTTGGACGGCCATGATCACGGGGTTTGCTAAGAGTGGCAGAGTTGGAAAGGCCATTGAGCTGTTTGATATGTTGAGACAGAAAGATGATTTTGTTTGGACGGCTGTGATATCTGGGTTTGTGAGTAATAAGGAGTATGAGGAAGCTTTGCGTTGGTATGCTCGGATGAACTGGGAAGGATGCAGGCCTAATCCTTTAACTATTAGCAGTGTTCTAGCTGCTTCAGCTGCTTTGGTGGCACTGAATGAAGGGCTTCAGATTCATACTTGTGTTCTGAAGATGAACCTAGAATGTGATCTGTCTATACAAAATTCTCTTATATCATTTTATGCTAAGTGTGGAAATGTAATTGATGCCCACAGGATCTTCACGGATGTCACTGAACCAAATGTCATCTCTTATAACTCAATCATCAANGGGTTTGCACAAAATGGCTTTGCTGAAGAAGCTCTCGGGGTCTATAAAAGAATGCTGTGTGAAGGCCATGAACCAAACCATGTTACTTTCCTTGCTGTTCTTTCAGCTTGTACTCATGCGGGACTAGTTGAAGAGGGATGGAATTTATTTAACACCATGAAGTCTCGTTATCAAATTGAGCCAGAAGCTGATCATTATGCTTGCATGGTTGATCTCCTTGGCCGTGCTGGTTTGCTAGATGAAGCTATTGATTTAATCCGTTCGATGCCGTTAAAGCCCCATTCTGGAGTTTGGGGGGCTATTCTTGGTGCAAGCAAGACGCACCTACGTCTCGACCTTGCTGAGCTTGCGGCTCAACATATTGCTGAGCTGGAGCCTGAAAATGCAACTCCTTATGTGGTATTATCCAAATTGTATTCTGCTTCTGGGAAAAAGATTGACAGTGACTTATTAAAAATTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05041	9145	11231	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005041s00044474.1	PF01535.15	PPR	37	63	0.024
Glyur005041s00044474.1	PF01535.15	PPR	65	94	2.40E-07
Glyur005041s00044474.1	PF01535.15	PPR	96	124	9.50E-07
Glyur005041s00044474.1	PF13041.1	PPR_2	125	170	1.80E-08
Glyur005041s00044474.1	PF01535.15	PPR	200	220	0.12
Glyur005041s00044474.1	PF13041.1	PPR_2	225	272	1.20E-12
Glyur005041s00044474.1	PF01535.15	PPR	301	324	0.0082

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.237
SRR1783600	control	1.291
SRR1783602	moderate drought stress	1.362
SRR1811619	moderate drought stress	1.315

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.802
DRR006520	Root Summer glycyrrhizin high producing strain	1.551
DRR006521	Root Winter glycyrrhizin high producing strain	1.434
DRR006522	Root Winter glycyrrhizin high producing strain	0.931
DRR006523	Root Summer glycyrrhizin low producing strain	2.361
DRR006524	Root Summer glycyrrhizin low producing strain	2.078
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.590
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.674

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.050
SRR2868004	Drought Stress (root)	2.137
SRR2967015	Control (root)	2.021

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.021
SRR9715740	Leaf	0.788
SRR9715741	Leaf	0.499
SRR9715739	Root	1.562
SRR9715742	Root	2.558
SRR9715743	Root	2.556

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.177
SRR8749028	MeJA induced 9h	3.094
SRR8749029	MeJA induced 9h	1.190
SRR8749030	Uninduced	0.405
SRR8749031	Uninduced	0.197
SRR8749032	Uninduced	0.445

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.059
SRR8400027	Control - Root	3.146