Gene detail information of Glyur005029s00042641 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G37210.1 | 1.00E-74 | lysine decarboxylase family protein |
| NR | XP_003590484.1 | 7.13E-110 | hypothetical protein MTR_1g064260 [Medicago truncatula] |
| COG | YP_686619.1 | 4.00E-47 | hypothetical protein RCIX2172 [Methanocella arvoryzae MRE50] |
| Swissprot | tr|Q8L8B8|LOG3_ARATH | 1.00E-93 | Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 |
| trEMBL | tr|G7IBJ6|G7IBJ6_MEDTR | 3.00E-110 | Cytokinin riboside 5'-monophosphate phosphoribohydrolase {ECO:0000313|EMBL:AES60735.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold05029 | 6489 | 11223 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur005029s00042641.1 | PF03641.9 | Lysine_decarbox | 58 | 141 | 3.20E-31 |
| Glyur005029s00042641.2 | PF03641.9 | Lysine_decarbox | 58 | 141 | 3.20E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.352 |
| SRR1783600 | control | 0.449 |
| SRR1783602 | moderate drought stress | 0.520 |
| SRR1811619 | moderate drought stress | 0.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.040 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.102 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.066 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.463 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.917 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.656 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.613 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.371 |
| SRR2868004 | Drought Stress (root) | 11.890 |
| SRR2967015 | Control (root) | 13.596 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.699 |
| SRR9715740 | Leaf | 0.914 |
| SRR9715741 | Leaf | 1.928 |
| SRR9715739 | Root | 0.190 |
| SRR9715742 | Root | 1.020 |
| SRR9715743 | Root | 1.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.218 |
| SRR8749028 | MeJA induced 9h | 11.133 |
| SRR8749029 | MeJA induced 9h | 13.659 |
| SRR8749030 | Uninduced | 6.130 |
| SRR8749031 | Uninduced | 2.178 |
| SRR8749032 | Uninduced | 2.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.528 |
| SRR8400027 | Control - Root | 14.118 |