Gene detail

Gene detail information of Glyur005016s00041159.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G35800.1	RNA polymerase II large subunit
NR	XP_004512182.1	PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cicer arietinum]
COG	NP_579292.1	DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus DSM 3638]
Swissprot	tr\|P18616\|NRPB1_ARATH	DNA-directed RNA polymerase II subunit 1
trEMBL	tr\|K7LNL8\|K7LNL8_SOYBN	DNA-directed RNA polymerase {ECO:0000256\|RuleBase:RU004279}

Sequence

Transcript Sequence

>Glyur005016s00041159.1
ATGGATATACGGTTCCCTTTCTCTCCGGCGGAGGTCGCCAAAGTCCGAATGGTTCAGTTTGGAATACTGAGCCCCGACGAAATCAGGCAAATGTCTGTGGTGCAAATCGAGCATGGTGAGACGACGGAGAGAGGGAAACCCAAGGTTGGAGGATTGAGCGATCCTCGGCTTGGAACTATTGACAGAAAGATGAAGTGTGAGACTTGTACAGCTAACATGGCTGAATGCCCTGGCCACTTTGGCCACTTGGAGCTTGCCAAGCCTATGTTCCACATTGGATTTCTGAAGACCGTGCTTAACATAATGCGCTGTGTTTGCTTTAACTGCTCAAAAATTCTAGCTGATGAGCAAGATCATAAGTTTAAGCAAGCTTTGAGGATCAGGAATCCCAAAAATAGGCTGAAAAAAATTTTGGATGCTTGCAAAAACAAAACCAAGTGTGATGGCGGTGATGAAATTGACATGCCTGGTCAAGATGGCGATGAGCCGGTTAAAAAGAGTCGTGGTGGCTGTGGTGCTCAGCAACCTAAGATCACTATTGATGGGATGAAAATGATTGCAGAGTATAAAGCTCAAAGGAAGAAAAGTGATGACCAGGAACAGCTTCCTGAACCCGTAGAAAGGAAACAGACTCTTTCTGCAGAAAGGGTTCTCAGTGTTCTAAAAAGGATAAGTGATGAGGACTGCCAGTTGTTAGGCTTGAATCCTAAGTATGCCCGTCCTGACTGGATGATTTTACAAGTTCTTCCAATTCCTCCTCCGCCTGTGAGACCTTCTGATGATTTAACTCATCAGCTGGCCATGATCATCAGGCACAATGAGAATCTGAAGAGACAGGAGAGGAACGGATCTCCTGCACATATTATTTCAGAGTTTGCTCAGTTGTTGCAGTTTCACATAGCCACATATTTTGATAATGAGTTGCCTGGATTGCCAAGGGCTACTCAAAGATCTGGAAGGCCTATCAAATCAATATGTAGCAGGCTTAAAGCCAAAGAAGGCCGGATTAGAGGTAACTTGATGGGAAAAAGAGTTGATTTTTCTGCTCGAACAGTAATTACACCAGATCCAACCATCAACATCGATCAATTGGGAGTACCGTGGAGTATTGCTTTGAATCTTACATACCCTGAGACTGTGACTCCATATAACATTGAAAGGTTGTCATTTGAGTATGACTTCTCAGTGGAGCGTCATTTGAATGATGGAGACTTTGTTCTCTTCAATCGTCAGCCTAGTCTTCACAAGATGTCTATCATGGGGCATAGAATCAAAATCATGCCTTATTCTACTTTCCGGCTTAACTTGTCAGTAACTTCACCATATAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAGTCATTTGAGACCAGAGCTGAGGTGTTGGAGCTGATGATGGTGCCTAAATGCATTGTGTCGCCTCAGTCAAACAGGCCAGTAATGGGAATTGTCCAAGATACACTTTTAGGATGCCGAAAAATCACCAAGAGAGATACGTTCATTTCAAAGGATGTTTTTATGAATACATTGATGTGGTGGGAAGATTTTGATGGGAAAGTTCCTATTCCTACAATATTGAAGCCGGAACCAATGTGGACTGGGAAACAAGTTTTCAATCTCATCATTCCTAAACCAATAAATCTAATTAGATATTCTAGTTGGCACAATGAGAGTGAAAGGGGACCCATAACCCCTGGGGATACAGTGGTCAGAATTGAAAAGGGGGAACTACTCACTGGAACTCTCTGCAAAAAGACGCTAGGAACATCTACTGGAAGTCTCATTCATGTAATTTGGGAAGAGGTTGGCCCTGACGCAGCTCGCAAATTTCTTGGTCATACTCAGTGGCTTGTAAACTACTGGCTTTTGCAGAATGCTTTTAGCATTGGAATCGGTGATACAATTGCTGATGCTTCGACTATGGAGGTTATTAATCAGACTATTTCACAAGCTAAGGAGAAAGTGAAACAACTCATCCGGGATGCTCATGAAAAGAAATTGGAAGCTGAACCTGGTCGGACAATGATGGAGTCATTTGAAAATAGAGTGAACCAGACTCTGAATAGAGCTCGTGATGATGCGGGAAATAGTGCCCAAAAAAGTTTATCTGAGAGCAATAATCTGAAAGCAATGGTGACAGCTGGTTCCAAGGGAAGTTTCATCAACATATCCCAGATGACTGCTTGTGTGGGCCAACAGAACGTTGAGGGTAAGCGAATTCCATTTGGGTTCATAGACCGAACATTGCCCCACTTCACAAAAGATGATTATGGGCCTGAAAGTCGTGGCTTTGTGGAGAACTCATATCTCCGTGGACTGACCCCTCAAGAGTTCTTTTTCCATGCCATGGGTGGCAGGGAAGGTCTTATTGATACTGCAGTGAAGACTTCTGAAACTGGGTACATTCAGAGGCGGCTTGTGAAGGCCATGGAGGATATCATGGTTAAATATGATGGGACGGTTAGGAACTCATTGGGAGATGTTATACAATTTTTGTATGGAGAAGATGGCATGGATGCTGTTTGGATAGAAACGCAGAAGCTCGATTCTCTGAAAATGAAAAAAACAGAATTTGATAGGGTTTTTAGGTATGAATTTGATGATGAAAACTGGAAGCCTACTTACATGCTTGAAGAGCCTGTAGAAGACTTGAAAACCATCAGAGAGTTTCGAAATGTGTTTGAGGCTGAAGTTCAAAAGCTTGAAGCTGATAGATATCAACTTGCAACTGAGATAGCCACTACTGGTGACAGTTCTCTGCCACTACCTGTTAACCTTAAGAGGCTTATCTGGAATGCTCAGAAGACCTTTAAGGTTGACTTCCGAAGGCCCTCTGATATGCATCCAATGGAAATTGTAGAAGCTATTGATAAGCTCCAGGAGCGACTTAAGGTAGTTCCTGGGGAAGACCTTTTAAGTCAAGAGGCTCAGAAGAATGCTACTCTCCTTTTCAATATTCTGCTTCGCAGCACTTTTGCCAGTAAAAGGGTCCTGGAGGAATACAGGCTTTCTCGTGAGGCATTCGAATGGTTAGTGGGAGAAATAGAATCAAGGTTCCTGCAATCACTTGTAGCCTCTGGGGAAATGATTGGTTGTGTGGCAGCACAATCAATTGGTGAGCCTGCTACTCAGATGACTCTCAACACTTTCCACTATGCTGGTGTCAGTGCAAAGAACGTCACTCTTGGTGTTCCTAGGTTAAGGGAAATCATTAATGTGGCAAAGAGAATTAAAACACCTTCTTTGTCTGTGTTCTTGAAACCTGAGGTTGCTAAAACTAAAGAGAGAGCCAAGAGTGTGCAGTGTGCTTTAGAATATACCACTCTCCGTAGTGTGACTCAAGCTACAGAGGTGTGGTATGATCCGGACCCAATGAGTACAATAATTGACGAGGATGTTGATTTTGTGAAGTCCTACTATGAAATGCCTGATGAAGAAGTTGCTCTTGAAAAGATTTCACCTTGGTTGCTTCGCATAGAACTGAATCGTGAAATGATGGTGGATAAGAAGTTGAGTATGGCTGACATTGCTGAGAAGATCAACCTTGAATTTGATGATGACTTGACATGCATATTTAATGACGACAATGCTGAAAAACTTATACTTCGTATACGTATTATGAATGATGAAGGACCCAAGGGAGAGATTCAGGATGAATCTGCCGAAGATGATGTTTTCTTAAAGAAAATAGAAAGCAACATGCTGACTGAAATGACATTACGAGGTATCCCAGATATAAACAAGGTTTTTATAAAAAATACTAAAGTCCAGAAGTTTGATGAGAATGAAGGTTTTAAGCCTCATGAGGAATGGATGCTTGATACTGAAGGCGTCAACCTTTTAGCTGTAATGTGCCATGATGACGTTGATGCAACAAGGACCACAAGCAACCACTTGATTGAAGTCATTGAAGTTCTTGGTATTGAGGCAGTTCGGCGGGCTCTGCTTGACGAATTGCGTGTTGTCATTTCTTTTGATGGTTCTTACGTCAATTACAGGCACCTGGCTATTCTTTGTGATACCATGACATATCGGGGACATTTGATGGCAATTACACGTCATGGTATCAACAGGAATGATACTGGACCAATGATGAGATGCTCATTTGAGGAGACTGTTGATATTCTCCTTGATGCTGCAGTATATGCTGAGACTGATTACTTGAGGGGTGTAACTGAAAATATTATGTTAGGTCAACTTGCCCCCATAGGTACTGGTGAATGTGGCCTGTTACTTAATGATGAGATGCTGAAGAATGCTATTGAGCTTCAGCTACCTAGCTATATGGATGGTCTTGATTTTGGCATGACACCTGCTCGGTCCCCAATATCTGGAACTCCGTATCATGAAGGCTTGATGTCTCCAAATTATTTGTTGAGCCCAAATCTACGGCTGTCTCCTAGTACTGATGCACAGTTTTCACCTTATGTTGGTGGGATGGCATTTTCTCCTACTTCATCTCCTGGTTACAGTCCGTCATCACCAGGCTATAGTCCATCATCACCTGGATATAGCCCTACTTCGCCAGGGTACAGCCCCACATCTCCCGGATACAGCCCCACATCACCTGGGTACAGCCCCACATCTCCAACATACAGTCCTAGCTCTCCAGGATATAGTCCTACGAGCCCAGCTTATTCACCTACAAGTCCATCTTACTCTCCCACATCACCCAGCTATAGCCCCACATCACCCAGCTACAGCCCCACATCACCCAGCTACAGCCCAACATCACCAAGCTACAGCCCCACATCTCCCAGCTATAGCCCCACTTCACCAGCATACAGCCCCACTTCNCCTGCATACAGCCCCACTTCACCTGCATATAGTCCCACTTCTCCATCATATAGCCCGACATCACCTTCGTATAGTCCAACTTCGCCTTCGTACAGCCCCACATCACCCTCGTACAGCCCGACATCTCCATCATATAGTCCTACATCGCCTGCTTACAGTCCCACATCTCCTGGGTACAGCCCAACATCACCCTCTTACAGCCCGACATCTCCATCGTATAGTCCTACTTCCCCAAGTTACAATCCACAGTCTGCAAAGTATAGTCCTTCGTTGGCATATTCTCCCAGCAGTCCAAGATTGTCTCCATCAAGTCCATATAGTCCCACATCTCCAAACTATAGCCCGACATCTCCATCATATTCACCAACATCTCCATCTTACTCTCCATCGAGCCCAACATACAGTCCCAGCAGCCCATACAATTCTGGTGTGAGCCCAGACTATAGCCCAAGTTCACCACAATTTAGTCCCAGTACGGGTTACTCACCAAGTCAACCTGGTTACTCACCATCGTCAACCAGCCAATACACTCCACAGACGAATGACAAAGATGATAAAGGCACTCAATGA

Protein Sequence

>Glyur005016s00041159.1
MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLNIMRCVCFNCSKILADEQDHKFKQALRIRNPKNRLKKILDACKNKTKCDGGDEIDMPGQDGDEPVKKSRGGCGAQQPKITIDGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLSVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPSDDLTHQLAMIIRHNENLKRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLSFEYDFSVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFISKDVFMNTLMWWEDFDGKVPIPTILKPEPMWTGKQVFNLIIPKPINLIRYSSWHNESERGPITPGDTVVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMEVINQTISQAKEKVKQLIRDAHEKKLEAEPGRTMMESFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQLATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWLVGEIESRFLQSLVASGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVFLKPEVAKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDVDFVKSYYEMPDEEVALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEGPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENEGFKPHEEWMLDTEGVNLLAVMCHDDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDYLRGVTENIMLGQLAPIGTGECGLLLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTPYHEGLMSPNYLLSPNLRLSPSTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPSSPQFSPSTGYSPSQPGYSPSSTSQYTPQTNDKDDKGTQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05016	1537	9331	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03006	RPB1, POLR2A	EC:2.7.7.6	Purine metabolism	map00230
			Pyrimidine metabolism	map00240
			RNA polymerase	map03020
			Huntington's disease	map05016
			Herpes simplex infection	map05168
			Epstein-Barr virus infection	map05169

Gene Ontology

biological_process

GO:0006351 transcription, DNA-templated

GO:0006366 transcription from RNA polymerase II promoter

cellular_component
GO:0005665 DNA-directed RNA polymerase II, core complex

molecular_function

GO:0003677 DNA binding

GO:0003899 DNA-directed RNA polymerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005016s00041159.1	PF04997.7	RNA_pol_Rpb1_1	14	340	2.60E-105
Glyur005016s00041159.1	PF00623.15	RNA_pol_Rpb1_2	342	389	5.90E-15
Glyur005016s00041159.1	PF00623.15	RNA_pol_Rpb1_2	393	471	1.30E-37
Glyur005016s00041159.1	PF04983.13	RNA_pol_Rpb1_3	475	638	4.40E-47
Glyur005016s00041159.1	PF05000.12	RNA_pol_Rpb1_4	666	769	5.50E-39
Glyur005016s00041159.1	PF04998.12	RNA_pol_Rpb1_5	776	1366	1.00E-105
Glyur005016s00041159.1	PF04992.9	RNA_pol_Rpb1_6	842	1026	1.90E-67
Glyur005016s00041159.1	PF04990.7	RNA_pol_Rpb1_7	1111	1245	8.90E-52
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1487	1501	7.4
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1502	1515	0.17
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1516	1529	0.029
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1530	1543	0.56
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1544	1557	0.033
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1558	1571	0.3
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1572	1585	0.35
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1586	1599	0.19
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1600	1613	0.023
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1614	1627	0.35
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1628	1641	0.37
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1642	1655	0.19
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1656	1669	0.054
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1670	1683	0.37
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1710	1723	0.11
Glyur005016s00041159.1	PF05001.8	RNA_pol_Rpb1_R	1724	1737	5

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.325
SRR1783600	control	28.853
SRR1783602	moderate drought stress	41.241
SRR1811619	moderate drought stress	41.182

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	24.718
DRR006520	Root Summer glycyrrhizin high producing strain	24.211
DRR006521	Root Winter glycyrrhizin high producing strain	21.237
DRR006522	Root Winter glycyrrhizin high producing strain	20.903
DRR006523	Root Summer glycyrrhizin low producing strain	20.898
DRR006524	Root Summer glycyrrhizin low producing strain	21.034
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.035
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.250

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.607
SRR2868004	Drought Stress (root)	29.304
SRR2967015	Control (root)	32.407

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.313
SRR9715740	Leaf	11.767
SRR9715741	Leaf	22.505
SRR9715739	Root	6.677
SRR9715742	Root	33.353
SRR9715743	Root	29.256

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.193
SRR8749028	MeJA induced 9h	19.647
SRR8749029	MeJA induced 9h	16.850
SRR8749030	Uninduced	8.311
SRR8749031	Uninduced	6.834
SRR8749032	Uninduced	8.967

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.493
SRR8400027	Control - Root	25.161