Gene detail

Gene detail information of Glyur005013s00046777

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G27960.1	0	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_007151047.1	0	hypothetical protein PHAVU_004G014000g [Phaseolus vulgaris]
COG	YP_004385194.1	2.00E-31	TPR-repeat-containing protein [Methanosaeta concilii GP6]
trEMBL	tr\|D2DWB2\|D2DWB2_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW23041.1}

Sequence

Transcript Sequence

>Glyur005013s00046777.1
ATGCTTGGGTTAGGTATGGATGAATTAAACATGAATAATAGTGCAGCTGAGGAACCTAGTGGGAGTTACACACCCCATAAGGANAACTTCACTCAGCAAGCATCTCCAAGGAGTACANTGAGTCCAAGAAGTATTCAGAGTGACTCAATTGATTTGGCTATTGATGGGGTGGTGGATACCTCTATTGAGCAATTGTATTACAATGTTTGTGAAATGCGGAGCTCTGATCAATCACCCTCCAGGACTAGTTTTTACTCATATGGTGAAGAGTCAAGGATAGATTCAGAGTTGTGCCACCTTGTTGGAGATCTTGTGGATTTGGAGATTACAAAGAAGGTGGTTGCTGAGGCTAAAGAGAACTACAAAACCAATGCTAGCAGTGAGAAAGATATTGTGTCATGTGGCAAGGAACCTACTACAAAGAAGGATAATGACCAATCACCAAGCTCAACAAGGGTCATTGAAGGATCAACCAAGTCAACCCCCAAAAGCAGAAAGAGGAATGAGAAGGGAACGAGAAAAGGAAATGGTCTTTACAATATGAGGAAGCATAGGAGCCTTGGTTTGAAGGGGATTGAGGATTGTGTTGCTGCTGGGTTGGATGAATCTGACCTGGGACCACTTTTGCTCAAGCGAACAAGAGACATGATCTCCTCGGGTGGGAATCCACAGAAAGCTCTTGATTTGGCTCTTAGAGCTTTGAAGTCATTTGAGATGTGTGCAGATGGAAAGCCCAGTTTAGAATTAGTCATGTGTCTGCATGTTTTGGCAACAATATACTGTAATTTAGGACAATACAATGAGGCTATTCCCATTCTTGAGCGTTCCATTGATATTCCTGTATTAGAGAATGGCCAAGATCATGCACTGGCTAAGTTTGCAGGGTGCATGCAATTGGGTGATACTTATGCAATGATGGGGCAGATTGAGAATTCTATACTGTTTTATACAGTAGGCCTTGAAATTCAAGGGCAGGTCTTGGGGGGAACAGACCCGCGGTTTGGTGAGACGTGTCGCTATGTGGCTGAGGCCCATGTTCAGGCACTGCAGTTTGATGAAGCTAAGAAGCTGTGTCAGACAGCTCTTGATATTCACAGGGGAAATGGGTCTCCTACTTCAGTTGAGGAAGCAGCAGATAGGAGACTGATGGGGCTTATCTGTGACTCAAAGGGTGATTATGAAGCTGCTCTAGAGCANTATGTTTTAGCAAGCATGGCCATGGTAGCAAATGGCCAGGAAGTGGATGTGGCTTCAGTTGATTGCAGTATAGGTGATGCCTATTTGTCATTGGCACGCTATGATGAGGCAGTGTTTTCTTATCAGAAAGCACTCACTGTGTTCAAATCAACCAGAGGAAAGAACCATCCAAAAGTTGCTTCAGTCTATGCCCGGTTAGCTGATTTGTACAACAAGATAGGGAAGTTCAAGGAATCACAATCCTACTGTGNAAATGCACTCAGGATTTTTGGGAAGACTAACCCTGGGATCTCCTCAGAAGAGANTGCTAATGGTATGATAGATGTTGCTGCTATCTATCAATCCATGAACGAATTGGAGAAGGGATTGAAGTTGCTCAAAAAGGCCTTGAAGTTATATGGCAATGCTCCTGGTCAACAAAATACTATTGCAGGAATTGAGGNCCAAATGGGGGTTCTGTACTATATGCTGGGGAACTATTCTGATTCTTACAACATCTTTAAAAGTGCCATTGCCAAGCTTCGTGCAAGTGGAGAGAAAAAATCTGCTTTGTTTGGGATTGCATTGAACCAAATGGGTCTTGCTTGCATCCAGCATTATGCTATAAATGAGGCAGCAGATTTGTTTGAAGAGGCAAGGACTATATTGGAGAAAGAGTATGGTCCTTATCACCCAGACACCTTAGGGGTCTATAGCAATCTAGCAGGAACCTATGATGCAATGGGAAGAGTGGATGATGCCATTGAAATTTTGGAATATGTAGTTGGCATGAGAGAAGAGAGGCTTGGAACAGCAAACCCTGATGTGGATGATGAGAAACGTAGGTTGGCAGAGTTGTTGAAAGAAGCAGGCAGGGCTCGGAACAGGAAGTCAAAAAGATCATTGGAAACTCTCCTTGATACACTTGGCATCAAGGTCCTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05013	1217	3559	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005013s00046777.1	PF13374.1	TPR_10	251	278	0.0019
Glyur005013s00046777.1	PF13424.1	TPR_12	415	489	1.40E-12
Glyur005013s00046777.1	PF13424.1	TPR_12	586	658	6.90E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.845
SRR1783600	control	0.831
SRR1783602	moderate drought stress	1.703
SRR1811619	moderate drought stress	1.718

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.976
DRR006520	Root Summer glycyrrhizin high producing strain	1.098
DRR006521	Root Winter glycyrrhizin high producing strain	0.105
DRR006522	Root Winter glycyrrhizin high producing strain	0.103
DRR006523	Root Summer glycyrrhizin low producing strain	0.338
DRR006524	Root Summer glycyrrhizin low producing strain	0.318
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.104
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.001

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.057
SRR2868004	Drought Stress (root)	1.271
SRR2967015	Control (root)	0.762

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.260
SRR9715740	Leaf	2.243
SRR9715741	Leaf	1.425
SRR9715739	Root	0.307
SRR9715742	Root	3.465
SRR9715743	Root	2.481

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.142
SRR8749028	MeJA induced 9h	0.091
SRR8749029	MeJA induced 9h	0.171
SRR8749030	Uninduced	0.108
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.013

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.209
SRR8400027	Control - Root	4.531