Gene detail

Gene detail information of Glyur005006s00041819

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G35500.1	1.00E-124	shikimate kinase like 2
NR	XP_003517670.1	0	PREDICTED: probable inactive shikimate kinase like 2, chloroplastic-like [Glycine max]
COG	YP_007161771.1	1.00E-10	shikimate kinase [Cyanobacterium aponinum PCC 10605]
Swissprot	tr\|O82290\|SKL2_ARATH	7.00E-156	Probable inactive shikimate kinase like 2, chloroplastic (Precursor)
trEMBL	tr\|K7K189\|K7K189_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G01890.2}

Sequence

Transcript Sequence

>Glyur005006s00041819.1
ATCAGCATCAGATATGAATGATATTGTAATGTTATCTCTATCTATCGATCACTGATATGGCATCTGTTCCTACTGGTCTCCGTTTTCTTCCTCCAAATCCAAACATCACAACCAGAAGCCTCAACTTCTCTGTTTTGAAACCAAATGTCGTGTCACTTCGTTCATTCTCTTACCTTTCTTCAATATCATTCTCTCTATCTCACAAATACTCTCTTGGTCTACGTTCCTGTAAGTGTTCCTTCACTGCCCCCGTTCCCACCACAACCTACGAGTTTTCTGATGGTGTTTCGGAGATGGAGTTAAGATTACATATAGGAGGCTTGGATATAAGAACAACAAAAGACATATTGGTTGATGCAAACGATACCTCTTTGGCTATCAGAGTGTTGCGGTCAGGGTCTCCCGTCACACTCATAGAAACCAATCCTCTTTTTGACAGGATTAAACCCTCTGAAACAATATGGTATATAGATGATGATCAGCTTGTTGTGAGTTTCAAGAAACAGGACCCTGAGTTGAAATGGCCTGACATCATGGAGTCATGGGAATCACTTGCTGCAGGATCTTCACAACTTTTGAAAGGAACATCAATCTATCTTGTTGGTGATTCAACCGAAATCAACCAAAAAGTGGCTCAAGAGCTTGCCACTGGTCTCGGGTACACACCACTTAGTACAAAAGACTTATTGGAAGCATATTCCAAGCAATCCGTGGATTCTTGGTTGCTTGCTGAAGGTTCTGACTCGGTAGCCGAAGCGGAAAGTGCTGTATTTGAAAGCATAAGTAGTCATGCAAGGACAATAGTTGCAACATTAGGAGGGAGACAGGGTGCTGCTGGAAGATCTGATAAATGGCGACATCTTTATGCAGGATTTACTGTCTGGTTGTCACAGACTGAAGCAACAGATGAACATTCTGCAAAGGAGGAGACTCACAAAAGCGTCAAAGATGGCATAGTTGCATACACAAATGCAGATGTGGTCGTCAAGCTACAGGGCTGGGATCCTGCTTATGCTAAAAATGTGGCACAAGGATGTTTGAGTGCCCTAAAACAGTTAATCCTGTCAGACAAAAAGCTTCCAGGTAAAAAGAGCCTCTACATAAGATTGGGATGTCGTGGTGATTGGCCAGACATCAAACCCCCTGGTTGGGATCCATCAAGTGAAGGTGTCTCAACTCTTGGCACACAATTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold05006	7275	10555	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur005006s00041819.1	PF01202.17	SKI	192	279	3.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.724
SRR1783600	control	5.691
SRR1783602	moderate drought stress	5.900
SRR1811619	moderate drought stress	5.695

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.540
DRR006520	Root Summer glycyrrhizin high producing strain	6.789
DRR006521	Root Winter glycyrrhizin high producing strain	4.294
DRR006522	Root Winter glycyrrhizin high producing strain	4.196
DRR006523	Root Summer glycyrrhizin low producing strain	6.374
DRR006524	Root Summer glycyrrhizin low producing strain	7.671
DRR006525	Leaf Summer glycyrrhizin high producing strain	44.954
DRR006526	Leaf Summer glycyrrhizin high producing strain	45.835

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.929
SRR2868004	Drought Stress (root)	1.175
SRR2967015	Control (root)	2.115

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.065
SRR9715740	Leaf	26.853
SRR9715741	Leaf	14.244
SRR9715739	Root	0.878
SRR9715742	Root	0.760
SRR9715743	Root	0.545

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.955
SRR8749028	MeJA induced 9h	6.178
SRR8749029	MeJA induced 9h	4.374
SRR8749030	Uninduced	5.345
SRR8749031	Uninduced	3.821
SRR8749032	Uninduced	4.289

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.048
SRR8400027	Control - Root	3.759